Variant report

Variant	rs7087672
Chromosome Location	chr10:22778572-22778573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22628736..22631395-chr10:22777153..22780149,2	MCF-7	breast:
2	chr10:22773325..22774951-chr10:22776646..22779333,3	MCF-7	breast:
3	chr10:22775061..22779403-chr10:22779894..22783852,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11012952	1.00[CEU][hapmap]
rs11012962	1.00[CEU][hapmap]
rs11012972	1.00[CEU][hapmap]
rs11012978	1.00[CEU][hapmap]
rs11012980	1.00[CEU][hapmap]
rs11012989	1.00[CEU][hapmap]
rs11013010	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap]
rs12246511	0.93[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap]
rs12253249	1.00[CEU][hapmap]
rs12261027	1.00[CEU][hapmap]
rs12264748	0.87[EUR][1000 genomes]
rs1342317	1.00[CEU][hapmap]
rs1418377	0.93[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap]
rs16922217	1.00[CEU][hapmap]
rs16922235	1.00[CEU][hapmap]
rs2066354	1.00[CEU][hapmap]
rs2363568	1.00[CEU][hapmap]
rs3004	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs58552927	0.93[EUR][1000 genomes]
rs60317615	0.87[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482214	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7068522	0.87[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap]
rs7070356	1.00[CEU][hapmap]
rs7071015	1.00[CEU][hapmap]
rs7073377	1.00[CEU][hapmap]
rs7074430	1.00[CEU][hapmap]
rs7074847	1.00[CEU][hapmap]
rs7077927	1.00[CEU][hapmap]
rs7078252	1.00[CEU][hapmap]
rs7078770	0.87[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	1.00[CEU][hapmap]
rs7086718	1.00[CEU][hapmap]
rs7089276	0.94[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap]
rs7097932	0.87[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap]
rs7099308	1.00[CEU][hapmap]
rs7358106	1.00[CEU][hapmap]
rs73598513	0.81[EUR][1000 genomes]
rs74123055	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap]
rs7895113	0.80[EUR][1000 genomes]
rs7901797	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7904006	0.93[EUR][1000 genomes]
rs7907396	0.93[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7914800	0.87[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap]
rs9663254	0.87[EUR][1000 genomes]
rs9665348	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982870	chr10:22770802-22778774	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22765800-22806600	Weak transcription	Right Atrium	heart
2	chr10:22771000-22780200	Weak transcription	Brain Angular Gyrus	brain
3	chr10:22771600-22779800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:22775400-22779600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:22775800-22778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:22776800-22780600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:22778000-22778800	Enhancers	K562	blood
8	chr10:22778200-22778800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:22778200-22779200	Enhancers	GM12878-XiMat	blood
10	chr10:22778400-22778800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:22778400-22778800	Enhancers	Stomach Mucosa	stomach
12	chr10:22778400-22779000	Enhancers	Primary B cells from peripheral blood	blood

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