Variant report

Variant	rs12247258
Chromosome Location	chr10:22680408-22680409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22625398..22631647-chr10:22676300..22682265,8	K562	blood:
2	chr10:22614179..22617012-chr10:22679231..22681759,3	K562	blood:
3	chr10:22678662..22680456-chr10:22690935..22692529,2	K562	blood:
4	chr10:22607781..22611461-chr10:22678220..22681015,4	K562	blood:
5	chr10:22603971..22605635-chr10:22679537..22682108,3	K562	blood:
6	chr10:22662789..22665601-chr10:22678591..22680549,3	K562	blood:
7	chr10:22608333..22611559-chr10:22678806..22682635,4	K562	blood:
8	chr10:22628696..22632444-chr10:22679412..22682265,6	K562	blood:
9	chr10:22611886..22615757-chr10:22677839..22683321,7	K562	blood:
10	chr10:22604765..22607634-chr10:22679633..22681364,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269897	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000148444	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10828306	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012937	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012977	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012989	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012993	1.00[CHD][hapmap]
rs11013010	1.00[CEU][hapmap]
rs11552445	0.94[EUR][1000 genomes]
rs11813246	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817311	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817811	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12243038	1.00[CHD][hapmap]
rs12248190	1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12253249	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12261027	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12265492	1.00[CHD][hapmap]
rs1342317	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28496146	0.81[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs57283505	0.94[EUR][1000 genomes]
rs57753470	0.94[EUR][1000 genomes]
rs57847001	0.81[EUR][1000 genomes]
rs58046964	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58340985	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60602527	0.81[EUR][1000 genomes]
rs60837021	0.81[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs6482214	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs7069337	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7071015	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7072212	0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079548	1.00[CHD][hapmap]
rs7086239	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7094297	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7096866	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7358106	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7358250	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73596598	0.81[EUR][1000 genomes]
rs73596599	0.81[EUR][1000 genomes]
rs73596601	0.81[EUR][1000 genomes]
rs73598505	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73598507	0.94[EUR][1000 genomes]
rs73598508	0.94[EUR][1000 genomes]
rs73598512	0.81[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs7895751	0.94[EUR][1000 genomes]
rs7901473	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7904538	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904821	0.81[EUR][1000 genomes]
rs7907844	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7909597	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919200	0.94[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7921358	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22680400-22680800	Flanking Active TSS	K562	blood

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