Variant report

Variant	rs73596601
Chromosome Location	chr10:22644390-22644391
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
2	chr10:22633139..22635084-chr10:22643106..22645915,2	K562	blood:
3	chr10:22637253..22640890-chr10:22643528..22645990,3	K562	blood:
4	chr10:22644324..22646396-chr10:22653772..22656334,2	K562	blood:

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10828306	0.86[EUR][1000 genomes]
rs11012937	0.86[EUR][1000 genomes]
rs11012952	0.86[EUR][1000 genomes]
rs11012962	0.86[EUR][1000 genomes]
rs11012972	0.81[EUR][1000 genomes]
rs11012977	0.86[EUR][1000 genomes]
rs11012978	0.86[EUR][1000 genomes]
rs11012980	0.86[EUR][1000 genomes]
rs11012989	0.86[EUR][1000 genomes]
rs11552445	0.86[EUR][1000 genomes]
rs11813246	0.81[EUR][1000 genomes]
rs11814745	0.86[EUR][1000 genomes]
rs11817311	0.86[EUR][1000 genomes]
rs11817811	0.81[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	0.86[EUR][1000 genomes]
rs12247258	0.81[EUR][1000 genomes]
rs12253249	0.81[EUR][1000 genomes]
rs12261027	0.81[EUR][1000 genomes]
rs12264748	0.86[EUR][1000 genomes]
rs1342317	0.86[EUR][1000 genomes]
rs1539322	0.86[EUR][1000 genomes]
rs16922217	0.86[EUR][1000 genomes]
rs16922235	0.93[EUR][1000 genomes]
rs2066354	0.86[EUR][1000 genomes]
rs2363568	0.81[EUR][1000 genomes]
rs28496146	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3004	0.81[EUR][1000 genomes]
rs57283505	0.86[EUR][1000 genomes]
rs57753470	0.86[EUR][1000 genomes]
rs57847001	1.00[EUR][1000 genomes]
rs58046964	0.86[EUR][1000 genomes]
rs58340985	0.86[EUR][1000 genomes]
rs58884708	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60602527	1.00[EUR][1000 genomes]
rs60837021	1.00[EUR][1000 genomes]
rs6482209	0.81[EUR][1000 genomes]
rs6482213	0.81[EUR][1000 genomes]
rs6482214	0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7068522	0.86[EUR][1000 genomes]
rs7069337	0.86[EUR][1000 genomes]
rs7070356	0.86[EUR][1000 genomes]
rs7071015	0.81[EUR][1000 genomes]
rs7072212	0.86[EUR][1000 genomes]
rs7073377	0.81[EUR][1000 genomes]
rs7074430	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074847	0.86[EUR][1000 genomes]
rs7077927	0.81[EUR][1000 genomes]
rs7078252	0.81[EUR][1000 genomes]
rs7078770	0.86[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	0.81[EUR][1000 genomes]
rs7086718	0.86[EUR][1000 genomes]
rs7092483	0.86[EUR][1000 genomes]
rs7094297	0.86[EUR][1000 genomes]
rs7096866	0.86[EUR][1000 genomes]
rs7097932	0.86[EUR][1000 genomes]
rs7099268	0.86[EUR][1000 genomes]
rs7099308	0.86[EUR][1000 genomes]
rs7358106	0.86[EUR][1000 genomes]
rs7358250	0.86[EUR][1000 genomes]
rs73596598	1.00[EUR][1000 genomes]
rs73596599	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598505	0.86[EUR][1000 genomes]
rs73598507	0.86[EUR][1000 genomes]
rs73598508	0.86[EUR][1000 genomes]
rs73598512	0.86[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	0.86[EUR][1000 genomes]
rs7895113	0.93[EUR][1000 genomes]
rs7895751	0.86[EUR][1000 genomes]
rs7901473	0.81[EUR][1000 genomes]
rs7904538	0.86[EUR][1000 genomes]
rs7904821	0.86[EUR][1000 genomes]
rs7907844	0.86[EUR][1000 genomes]
rs7909597	0.86[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7914800	0.86[EUR][1000 genomes]
rs7918271	0.81[EUR][1000 genomes]
rs7919200	0.86[EUR][1000 genomes]
rs7920038	0.86[EUR][1000 genomes]
rs7921358	0.81[EUR][1000 genomes]
rs9663254	0.86[EUR][1000 genomes]
rs9665348	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22640600-22645400	Weak transcription	K562	blood

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