Variant report

Variant	rs58884708
Chromosome Location	chr10:22643159-22643160
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22635801..22637889-chr10:22640627..22643492,3	K562	blood:
2	chr10:22633139..22635084-chr10:22643106..22645915,2	K562	blood:
3	chr10:22630124..22631626-chr10:22641797..22644385,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10828306	0.80[EUR][1000 genomes]
rs11012937	0.80[EUR][1000 genomes]
rs11012952	0.80[EUR][1000 genomes]
rs11012962	0.80[EUR][1000 genomes]
rs11012977	0.80[EUR][1000 genomes]
rs11012978	0.80[EUR][1000 genomes]
rs11012980	0.80[EUR][1000 genomes]
rs11012989	0.80[EUR][1000 genomes]
rs11552445	0.80[EUR][1000 genomes]
rs11814745	0.80[EUR][1000 genomes]
rs11817311	0.80[EUR][1000 genomes]
rs12241555	0.80[EUR][1000 genomes]
rs12261027	0.87[EUR][1000 genomes]
rs12264748	0.80[EUR][1000 genomes]
rs1342317	0.80[EUR][1000 genomes]
rs1539322	0.80[EUR][1000 genomes]
rs16922217	0.80[EUR][1000 genomes]
rs16922235	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2066354	0.80[EUR][1000 genomes]
rs28496146	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57283505	0.80[EUR][1000 genomes]
rs57753470	0.80[EUR][1000 genomes]
rs57847001	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs58046964	0.80[EUR][1000 genomes]
rs58340985	0.80[EUR][1000 genomes]
rs60602527	0.93[EUR][1000 genomes]
rs60837021	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7068522	0.80[EUR][1000 genomes]
rs7069337	0.80[EUR][1000 genomes]
rs7070356	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7072212	0.80[EUR][1000 genomes]
rs7074430	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7074847	0.80[EUR][1000 genomes]
rs7078770	0.80[EUR][1000 genomes]
rs7086718	0.80[EUR][1000 genomes]
rs7092483	0.80[EUR][1000 genomes]
rs7094297	0.80[EUR][1000 genomes]
rs7096866	0.80[EUR][1000 genomes]
rs7097932	0.80[EUR][1000 genomes]
rs7099268	0.80[EUR][1000 genomes]
rs7099308	0.80[EUR][1000 genomes]
rs7358106	0.80[EUR][1000 genomes]
rs7358250	0.80[EUR][1000 genomes]
rs73596598	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73596599	0.93[EUR][1000 genomes]
rs73596601	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73598505	0.80[EUR][1000 genomes]
rs73598507	0.80[EUR][1000 genomes]
rs73598508	0.80[EUR][1000 genomes]
rs73598512	0.80[EUR][1000 genomes]
rs7893132	0.80[EUR][1000 genomes]
rs7895113	0.86[EUR][1000 genomes]
rs7895751	0.80[EUR][1000 genomes]
rs7904538	0.80[EUR][1000 genomes]
rs7904821	0.80[EUR][1000 genomes]
rs7907844	0.80[EUR][1000 genomes]
rs7909597	0.80[EUR][1000 genomes]
rs7914800	0.80[EUR][1000 genomes]
rs7919200	0.80[EUR][1000 genomes]
rs7920038	0.80[EUR][1000 genomes]
rs9663254	0.80[EUR][1000 genomes]
rs9665348	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22640600-22645400	Weak transcription	K562	blood

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