Variant report

Variant	rs6482215
Chromosome Location	chr10:22740699-22740700
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22627926..22632058-chr10:22737838..22740841,3	K562	blood:
2	chr10:22738855..22740957-chr10:22839794..22842697,2	MCF-7	breast:
3	chr10:22737046..22739451-chr10:22740492..22742378,3	K562	blood:
4	chr10:22732081..22734232-chr10:22738993..22741677,2	K562	blood:
5	chr10:22737046..22739451-chr10:22740492..22742345,2	K562	blood:
6	chr10:22732732..22735397-chr10:22740047..22741677,2	K562	blood:
7	chr10:22627926..22632058-chr10:22736197..22740841,5	K562	blood:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10828306	0.81[EUR][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012937	0.81[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs11012977	0.81[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012991	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012993	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs11012996	1.00[ASN][1000 genomes]
rs11012997	1.00[ASN][1000 genomes]
rs11012999	1.00[ASN][1000 genomes]
rs11013010	1.00[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs11552445	0.81[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11817311	0.81[EUR][1000 genomes]
rs11817873	1.00[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12246511	0.87[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs12248190	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12253013	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12253249	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12256920	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs12261027	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs12262743	1.00[CHB][hapmap]
rs12264748	0.94[EUR][1000 genomes]
rs12265492	0.84[ASW][hapmap];1.00[CHD][hapmap]
rs12265728	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1418377	0.87[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16922217	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16922277	1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs28496146	0.81[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283505	0.81[EUR][1000 genomes]
rs57753470	0.81[EUR][1000 genomes]
rs57847001	0.81[EUR][1000 genomes]
rs58046964	0.81[EUR][1000 genomes]
rs58340985	0.81[EUR][1000 genomes]
rs58552927	0.87[EUR][1000 genomes]
rs60317615	0.94[EUR][1000 genomes]
rs60602527	0.81[EUR][1000 genomes]
rs60837021	0.81[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6482213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs6482217	0.82[EUR][1000 genomes]
rs7068522	0.94[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap]
rs7071015	1.00[CEU][hapmap]
rs7072212	0.81[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap]
rs7074430	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap]
rs7078252	1.00[CEU][hapmap]
rs7078770	0.94[EUR][1000 genomes]
rs7079531	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7086239	1.00[CEU][hapmap]
rs7086718	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7087672	0.81[EUR][1000 genomes]
rs7089276	0.88[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7094297	0.81[EUR][1000 genomes]
rs7096866	0.81[EUR][1000 genomes]
rs7097932	0.94[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7358250	0.81[EUR][1000 genomes]
rs73596598	0.81[EUR][1000 genomes]
rs73596599	0.81[EUR][1000 genomes]
rs73596601	0.81[EUR][1000 genomes]
rs73598505	0.81[EUR][1000 genomes]
rs73598507	0.81[EUR][1000 genomes]
rs73598508	0.81[EUR][1000 genomes]
rs73598512	0.94[EUR][1000 genomes]
rs73598513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598514	1.00[ASN][1000 genomes]
rs73598515	1.00[ASN][1000 genomes]
rs73598517	1.00[ASN][1000 genomes]
rs73598520	1.00[ASN][1000 genomes]
rs73598521	1.00[ASN][1000 genomes]
rs73598526	1.00[ASN][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7893537	1.00[CHB][hapmap]
rs7895113	0.87[EUR][1000 genomes]
rs7895751	0.81[EUR][1000 genomes]
rs7898929	1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7901797	0.87[EUR][1000 genomes]
rs7904006	0.87[EUR][1000 genomes]
rs7904538	0.81[EUR][1000 genomes]
rs7904821	0.94[EUR][1000 genomes]
rs7907396	0.87[EUR][1000 genomes]
rs7907844	0.81[EUR][1000 genomes]
rs7909597	0.81[EUR][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914800	0.94[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap]
rs7918856	1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7919200	0.81[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9663254	0.94[EUR][1000 genomes]
rs9665348	0.94[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22739000-22743000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:22740400-22743200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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