Variant report

Variant	rs7893537
Chromosome Location	chr10:22727441-22727442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
2	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
3	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
4	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
5	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
6	chr10:22604268..22606309-chr10:22726549..22728219,2	MCF-7	breast:
7	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:
8	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
9	chr10:22725325..22727863-chr10:22750975..22754414,4	MCF-7	breast:
10	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
11	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269897	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000148444	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap]
rs10508646	0.92[EUR][1000 genomes]
rs10828309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap]
rs11012994	1.00[CHB][hapmap]
rs11012998	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	0.89[EUR][1000 genomes]
rs11013012	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812583	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251462	1.00[CEU][hapmap]
rs12256968	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap]
rs12262743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265492	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265728	1.00[CHB][hapmap]
rs16922285	1.00[CHB][hapmap]
rs3004	1.00[CHB][hapmap]
rs56269206	0.97[EUR][1000 genomes]
rs58253107	0.89[EUR][1000 genomes]
rs58554507	0.94[EUR][1000 genomes]
rs6482210	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs6482211	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap]
rs6482214	1.00[CHB][hapmap]
rs6482216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482218	0.92[EUR][1000 genomes]
rs7073403	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079531	1.00[CHB][hapmap]
rs7079548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7080269	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73598518	1.00[ASN][1000 genomes]
rs73598529	0.97[EUR][1000 genomes]
rs74123046	0.97[EUR][1000 genomes]
rs74123047	0.97[EUR][1000 genomes]
rs7899794	1.00[CHB][hapmap]
rs7911096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap]
rs7921007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923274	0.97[EUR][1000 genomes]
rs9663298	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22725400-22727600	Active TSS	Left Ventricle	heart
2	chr10:22725400-22727600	Active TSS	Psoas Muscle	Psoas
3	chr10:22725400-22727600	Active TSS	Right Atrium	heart
4	chr10:22725400-22727800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr10:22725600-22727600	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr10:22725600-22727600	Active TSS	Brain Anterior Caudate	brain
7	chr10:22725600-22727800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr10:22725800-22727600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:22725800-22727600	Flanking Bivalent TSS/Enh	Dnd41	blood
10	chr10:22725800-22727600	Active TSS	NHLF	lung
11	chr10:22726200-22728200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:22726400-22727600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr10:22726400-22728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:22726600-22727600	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr10:22726600-22727800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr10:22726600-22727800	Flanking Active TSS	HUVEC	blood vessel
17	chr10:22726800-22727600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr10:22726800-22727600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr10:22726800-22727600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:22726800-22727600	Flanking Active TSS	Thymus	Thymus
21	chr10:22726800-22727800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:22726800-22727800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:22726800-22727800	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr10:22726800-22728000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:22726800-22731400	Weak transcription	Gastric	stomach
26	chr10:22727000-22727600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr10:22727000-22727600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr10:22727000-22727600	Weak transcription	Esophagus	oesophagus
29	chr10:22727000-22727600	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr10:22727000-22727600	Flanking Active TSS	Fetal Stomach	stomach
31	chr10:22727000-22727600	Weak transcription	Small Intestine	intestine
32	chr10:22727000-22727600	Flanking Active TSS	NHEK	skin
33	chr10:22727000-22727800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:22727000-22727800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:22727000-22727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:22727000-22727800	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr10:22727000-22727800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr10:22727000-22727800	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr10:22727000-22727800	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr10:22727000-22727800	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr10:22727000-22727800	Flanking Active TSS	Osteobl	bone
42	chr10:22727000-22728000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:22727000-22728000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr10:22727000-22728000	Bivalent Enhancer	HepG2	liver
45	chr10:22727200-22727600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:22727200-22727600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
47	chr10:22727200-22727600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:22727200-22727800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
49	chr10:22727200-22727800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:22727200-22727800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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