Variant report

Variant	rs73598518
Chromosome Location	chr10:22726093-22726094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
2	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
3	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
4	chr10:22654035..22655946-chr10:22725226..22727293,2	MCF-7	breast:
5	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
6	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
7	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
8	chr10:22720460..22723028-chr10:22724618..22727294,3	MCF-7	breast:
9	chr10:22309684..22311536-chr10:22724578..22726219,2	MCF-7	breast:
10	chr10:22614072..22616553-chr10:22723702..22726327,3	MCF-7	breast:
11	chr10:22705475..22707462-chr10:22724469..22726250,2	MCF-7	breast:
12	chr10:22517700..22519413-chr10:22725254..22727174,2	MCF-7	breast:
13	chr10:22721771..22724573-chr10:22724819..22726354,2	K562	blood:
14	chr10:22629205..22631554-chr10:22724869..22726474,2	MCF-7	breast:
15	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
16	chr10:22725102..22726678-chr10:22737694..22740220,2	MCF-7	breast:
17	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
18	chr10:22725325..22727863-chr10:22750975..22754414,4	MCF-7	breast:
19	chr10:22603581..22606407-chr10:22724519..22726402,2	MCF-7	breast:
20	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
21	chr10:22707988..22710566-chr10:22725566..22727431,2	MCF-7	breast:
22	chr10:22652382..22654198-chr10:22725095..22727355,2	MCF-7	breast:
23	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000148444	Chromatin interaction

rs_ID	r²[population]
rs10828309	1.00[ASN][1000 genomes]
rs11012998	1.00[ASN][1000 genomes]
rs11013012	1.00[ASN][1000 genomes]
rs11812583	1.00[ASN][1000 genomes]
rs12243038	1.00[ASN][1000 genomes]
rs12248190	1.00[ASN][1000 genomes]
rs12256968	1.00[ASN][1000 genomes]
rs12258371	1.00[ASN][1000 genomes]
rs12262743	1.00[ASN][1000 genomes]
rs12265492	1.00[ASN][1000 genomes]
rs55927891	0.93[EUR][1000 genomes]
rs56768929	0.93[EUR][1000 genomes]
rs6482216	1.00[ASN][1000 genomes]
rs7073403	1.00[ASN][1000 genomes]
rs7079548	1.00[ASN][1000 genomes]
rs7080269	1.00[ASN][1000 genomes]
rs74123038	0.86[EUR][1000 genomes]
rs74123043	0.93[EUR][1000 genomes]
rs7893537	1.00[ASN][1000 genomes]
rs7911096	1.00[ASN][1000 genomes]
rs7921007	1.00[ASN][1000 genomes]
rs9663298	1.00[ASN][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22724600-22727000	Active TSS	Osteobl	bone
2	chr10:22725200-22726200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:22725200-22726600	Active TSS	Primary T cells from cord blood	blood
4	chr10:22725200-22726600	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr10:22725200-22726800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr10:22725200-22727000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:22725200-22727000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:22725200-22727000	Active TSS	Brain Substantia Nigra	brain
9	chr10:22725200-22727200	Active TSS	Brain Germinal Matrix	brain
10	chr10:22725200-22727200	Active TSS	Rectal Smooth Muscle	rectum
11	chr10:22725200-22727400	Active TSS	Brain Cingulate Gyrus	brain
12	chr10:22725200-22727400	Active TSS	HSMMtube	muscle
13	chr10:22725400-22726200	Flanking Active TSS	Colonic Mucosa	Colon
14	chr10:22725400-22726400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr10:22725400-22726600	Active TSS	Liver	Liver
16	chr10:22725400-22726800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:22725400-22726800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr10:22725400-22726800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr10:22725400-22726800	Active TSS	Duodenum Mucosa	Duodenum
20	chr10:22725400-22727000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr10:22725400-22727000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:22725400-22727000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:22725400-22727000	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr10:22725400-22727200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr10:22725400-22727200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr10:22725400-22727200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:22725400-22727200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:22725400-22727200	Active TSS	Brain Angular Gyrus	brain
29	chr10:22725400-22727200	Active TSS	Fetal Brain Female	brain
30	chr10:22725400-22727200	Active TSS	Fetal Kidney	kidney
31	chr10:22725400-22727400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:22725400-22727400	Flanking Active TSS	HMEC	breast
33	chr10:22725400-22727600	Active TSS	Left Ventricle	heart
34	chr10:22725400-22727600	Active TSS	Psoas Muscle	Psoas
35	chr10:22725400-22727600	Active TSS	Right Atrium	heart
36	chr10:22725400-22727800	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr10:22725600-22726200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:22725600-22726200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:22725600-22726200	Weak transcription	Fetal Brain Male	brain
40	chr10:22725600-22726200	Flanking Active TSS	NH-A	brain
41	chr10:22725600-22726400	Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr10:22725600-22726600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:22725600-22726600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:22725600-22726800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:22725600-22726800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:22725600-22726800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:22725600-22726800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr10:22725600-22726800	Active TSS	Fetal Muscle Leg	muscle
49	chr10:22725600-22726800	Active TSS	Fetal Thymus	thymus
50	chr10:22725600-22726800	Active TSS	Gastric	stomach

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