Variant report

Variant	rs12265492
Chromosome Location	chr10:22732059-22732060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22731789..22734479-chr10:22734948..22737688,3	K562	blood:
2	chr10:22729078..22734479-chr10:22734589..22737865,6	K562	blood:
3	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
4	chr10:22608440..22611101-chr10:22731642..22733769,3	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508646	0.89[EUR][1000 genomes]
rs10508647	1.00[GIH][hapmap]
rs10828309	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012993	1.00[CHD][hapmap]
rs11012998	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	0.87[EUR][1000 genomes]
rs11013012	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812583	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243038	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247258	1.00[CHD][hapmap]
rs12248190	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251462	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[AMR][1000 genomes]
rs12256968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258371	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539322	1.00[CHD][hapmap]
rs16922235	1.00[CHD][hapmap]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHD][hapmap]
rs56269206	0.94[EUR][1000 genomes]
rs58253107	0.86[EUR][1000 genomes]
rs58554507	0.92[EUR][1000 genomes]
rs6482210	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs6482211	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6482213	1.00[CHD][hapmap]
rs6482214	1.00[CHD][hapmap]
rs6482216	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482218	0.89[EUR][1000 genomes]
rs7069337	1.00[CHD][hapmap]
rs7073403	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079548	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[ASN][1000 genomes]
rs7080269	1.00[ASN][1000 genomes]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs73598518	1.00[ASN][1000 genomes]
rs73598529	0.94[EUR][1000 genomes]
rs74123046	0.94[EUR][1000 genomes]
rs74123047	0.94[EUR][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911096	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920038	1.00[CHD][hapmap]
rs7921007	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923274	0.94[EUR][1000 genomes]
rs9663298	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22727400-22732600	Weak transcription	HSMM	muscle
2	chr10:22727800-22733000	Weak transcription	Osteobl	bone
3	chr10:22728000-22732600	Weak transcription	GM12878-XiMat	blood
4	chr10:22728000-22732600	Weak transcription	HSMMtube	muscle
5	chr10:22728000-22733200	Weak transcription	Stomach Mucosa	stomach
6	chr10:22728000-22734200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:22728200-22732200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:22728200-22732200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:22730600-22733000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:22731400-22732400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:22731800-22733200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:22732000-22733000	Enhancers	HepG2	liver
13	chr10:22732000-22733200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:22732000-22733800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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