Variant report
| Variant | rs11012931 |
|---|---|
| Chromosome Location | chr10:22570941-22570942 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10508644 | 1.00[EUR][1000 genomes] |
| rs11012993 | 1.00[EUR][1000 genomes] |
| rs11012994 | 1.00[EUR][1000 genomes] |
| rs11012996 | 1.00[EUR][1000 genomes] |
| rs11012997 | 1.00[EUR][1000 genomes] |
| rs11012999 | 1.00[EUR][1000 genomes] |
| rs11818252 | 1.00[EUR][1000 genomes] |
| rs12251592 | 1.00[EUR][1000 genomes] |
| rs12253013 | 1.00[EUR][1000 genomes] |
| rs12256920 | 1.00[EUR][1000 genomes] |
| rs12258806 | 1.00[EUR][1000 genomes] |
| rs12265728 | 1.00[EUR][1000 genomes] |
| rs16922126 | 1.00[EUR][1000 genomes] |
| rs16922139 | 1.00[EUR][1000 genomes] |
| rs16922277 | 1.00[EUR][1000 genomes] |
| rs16922285 | 1.00[EUR][1000 genomes] |
| rs28665277 | 1.00[EUR][1000 genomes] |
| rs73598514 | 1.00[EUR][1000 genomes] |
| rs73598515 | 1.00[EUR][1000 genomes] |
| rs73598517 | 1.00[EUR][1000 genomes] |
| rs73598520 | 1.00[EUR][1000 genomes] |
| rs73598521 | 1.00[EUR][1000 genomes] |
| rs73598526 | 1.00[EUR][1000 genomes] |
| rs73598527 | 1.00[EUR][1000 genomes] |
| rs73598531 | 1.00[EUR][1000 genomes] |
| rs74121396 | 1.00[EUR][1000 genomes] |
| rs74123059 | 1.00[EUR][1000 genomes] |
| rs7898929 | 1.00[EUR][1000 genomes] |
| rs7899794 | 1.00[EUR][1000 genomes] |
| rs7918856 | 1.00[EUR][1000 genomes] |
| rs7918879 | 1.00[EUR][1000 genomes] |
| rs7919362 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825292 | chr10:22560347-22642200 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22570000-22571200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
