Variant report
| Variant | rs74121396 |
|---|---|
| Chromosome Location | chr10:22533892-22533893 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22525605..22527160-chr10:22533029..22535621,2 | K562 | blood: | |
| 2 | chr10:22532104..22538523-chr10:22539605..22546070,9 | MCF-7 | breast: | |
| 3 | chr10:22528332..22532330-chr10:22533041..22536116,4 | K562 | blood: | |
| 4 | chr10:22532777..22535733-chr10:22725259..22727750,2 | MCF-7 | breast: | |
| 5 | chr10:22532066..22534921-chr10:22539657..22541177,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DNAJC1-1 | chr10:22533728-22536734 | XLOC_008747 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10508644 | 1.00[EUR][1000 genomes] |
| rs11012931 | 1.00[EUR][1000 genomes] |
| rs11012993 | 1.00[EUR][1000 genomes] |
| rs11012994 | 1.00[EUR][1000 genomes] |
| rs11012996 | 1.00[EUR][1000 genomes] |
| rs11012997 | 1.00[EUR][1000 genomes] |
| rs11012999 | 1.00[EUR][1000 genomes] |
| rs11818252 | 1.00[EUR][1000 genomes] |
| rs12250894 | 1.00[EUR][1000 genomes] |
| rs12251592 | 1.00[EUR][1000 genomes] |
| rs12253013 | 1.00[EUR][1000 genomes] |
| rs12256920 | 1.00[EUR][1000 genomes] |
| rs12258806 | 1.00[EUR][1000 genomes] |
| rs12265728 | 1.00[EUR][1000 genomes] |
| rs16922126 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16922139 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16922277 | 1.00[EUR][1000 genomes] |
| rs16922285 | 1.00[EUR][1000 genomes] |
| rs28665277 | 1.00[EUR][1000 genomes] |
| rs73598514 | 1.00[EUR][1000 genomes] |
| rs73598515 | 1.00[EUR][1000 genomes] |
| rs73598517 | 1.00[EUR][1000 genomes] |
| rs73598520 | 1.00[EUR][1000 genomes] |
| rs73598521 | 1.00[EUR][1000 genomes] |
| rs73598526 | 1.00[EUR][1000 genomes] |
| rs73598527 | 1.00[EUR][1000 genomes] |
| rs73598531 | 1.00[EUR][1000 genomes] |
| rs7898929 | 1.00[EUR][1000 genomes] |
| rs7899794 | 1.00[EUR][1000 genomes] |
| rs7918856 | 1.00[EUR][1000 genomes] |
| rs7918879 | 1.00[EUR][1000 genomes] |
| rs7919362 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22533400-22534400 | Enhancers | A549 | lung |
| 2 | chr10:22533600-22534600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
