The 2.0 version of rSNPBase

Variant report

Variant rs7089954
Chromosome Location chr10:22840823-22840824
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22822200-22856000 Weak transcription Small Intestine intestine
2 chr10:22822800-22870200 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr10:22823000-22844600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
4 chr10:22823400-22845200 Strong transcription Primary monocytes fromperipheralblood blood
5 chr10:22823600-22842200 Weak transcription Colon Smooth Muscle Colon
6 chr10:22823800-22845200 Strong transcription Primary T helper cells PMA-I stimulated --
7 chr10:22824000-22844400 Strong transcription Primary B cells from cord blood blood
8 chr10:22824000-22844800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr10:22824000-22853000 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr10:22824400-22845400 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr10:22825000-22852800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr10:22825000-22863800 Weak transcription Hela-S3 cervix
13 chr10:22825600-22843800 Weak transcription Stomach Mucosa stomach
14 chr10:22825600-22888000 Weak transcription HMEC breast
15 chr10:22825800-22843600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr10:22826000-22843400 Weak transcription Fetal Brain Female brain
17 chr10:22826200-22843600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr10:22826600-22843400 Weak transcription Colonic Mucosa Colon
19 chr10:22827000-22842200 Weak transcription Right Atrium heart
20 chr10:22828800-22841400 Weak transcription HSMM muscle
21 chr10:22829000-22887400 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr10:22830600-22841200 Weak transcription Fetal Lung lung
23 chr10:22830600-22842400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr10:22830600-22853000 Weak transcription HUVEC blood vessel
25 chr10:22830800-22861000 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr10:22831200-22842800 Weak transcription Ovary ovary
27 chr10:22831200-22843200 Weak transcription NHLF lung
28 chr10:22831200-22843600 Weak transcription Esophagus oesophagus
29 chr10:22831200-22856400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr10:22831600-22842800 Weak transcription Rectal Smooth Muscle rectum
31 chr10:22831800-22852600 Weak transcription A549 lung
32 chr10:22832200-22843600 Weak transcription Pancreas Pancrea
33 chr10:22833000-22842000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr10:22833800-22842000 Weak transcription Gastric stomach
35 chr10:22834000-22841600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr10:22834000-22843400 Weak transcription Psoas Muscle Psoas
37 chr10:22834000-22843600 Weak transcription Right Ventricle heart
38 chr10:22834000-22843800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr10:22834000-22844200 Strong transcription Primary hematopoietic stem cells blood
40 chr10:22834200-22845400 Strong transcription Primary B cells from peripheral blood blood
41 chr10:22834200-22845400 Strong transcription GM12878-XiMat blood
42 chr10:22834400-22841200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr10:22834600-22844200 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr10:22834800-22853200 Strong transcription Primary T cells fromperipheralblood blood
45 chr10:22835000-22841800 Weak transcription Brain Angular Gyrus brain
46 chr10:22835000-22844400 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr10:22836600-22842800 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr10:22836800-22842000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr10:22836800-22842200 Weak transcription Left Ventricle heart
50 chr10:22836800-22843400 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015