Variant report

Variant	rs74123076
Chromosome Location	chr10:22831772-22831773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:22831526-22831912	HepG2	liver:	n/a	n/a
2	EP300	chr10:22831623-22832783	SK-N-SH	brain:	n/a	chr10:22831684-22831698
3	GATA2	chr10:22831741-22832257	SH-SY5Y	brain:	n/a	n/a
4	HNF4A	chr10:22831670-22831943	HepG2	liver:	n/a	chr10:22831859-22831874
5	POLR2A	chr10:22831325-22831918	GM12878	blood:	n/a	n/a
6	EP300	chr10:22831705-22832084	SK-N-SH_RA	brain:	n/a	n/a
7	MXI1	chr10:22831156-22832397	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr10:22831760-22831781	K562	blood:	n/a	n/a
9	FOXA1	chr10:22831588-22831948	HepG2	liver:	n/a	n/a
10	HNF4G	chr10:22831640-22831898	HepG2	liver:	n/a	n/a
11	HNF4A	chr10:22831631-22831983	HepG2	liver:	n/a	chr10:22831859-22831874
12	POLR2A	chr10:22831701-22831890	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:22830019-22835143	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:22826598..22829352-chr10:22831029..22834021,2	K562	blood:
2	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
3	chr10:22830647..22832751-chr10:22836166..22838265,2	K562	blood:
4	chr10:22609418..22612107-chr10:22829799..22832731,2	MCF-7	breast:

Variant related genes	Relation type
PIP4K2A	TF binding region
ENSG00000150867	Chromatin interaction
ENSG00000168283	Chromatin interaction

rs_ID	r²[population]
rs1359639	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56229946	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59428338	0.91[AFR][1000 genomes]
rs62640376	0.86[AFR][1000 genomes]
rs7089954	0.88[AFR][1000 genomes]
rs7923540	0.86[AFR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
3	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr10:22822800-22832600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:22824000-22833800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
14	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:22824200-22832000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:22824200-22833200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:22824200-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:22824400-22836400	Weak transcription	NHEK	skin
22	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:22824600-22836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:22825000-22832400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:22825000-22832800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr10:22825000-22833200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:22825000-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
33	chr10:22825200-22831800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:22825200-22832000	Strong transcription	Adipose Nuclei	Adipose
35	chr10:22825200-22832800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr10:22825200-22833000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:22825200-22833200	Strong transcription	Fetal Muscle Leg	muscle
38	chr10:22825200-22833600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:22825200-22833600	Strong transcription	Thymus	Thymus
40	chr10:22825200-22835400	Strong transcription	Dnd41	blood
41	chr10:22825200-22840000	Strong transcription	Fetal Stomach	stomach
42	chr10:22825400-22831800	Strong transcription	Spleen	Spleen
43	chr10:22825400-22832000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr10:22825400-22836800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:22825400-22838000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:22825400-22838000	Strong transcription	Fetal Intestine Small	intestine
47	chr10:22825600-22831800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:22825600-22833000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr10:22825600-22843800	Weak transcription	Stomach Mucosa	stomach
50	chr10:22825600-22888000	Weak transcription	HMEC	breast

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