The 2.0 version of rSNPBase

Variant report

Variant rs59428338
Chromosome Location chr10:22827968-22827969
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22819000-22830000 Weak transcription HUVEC blood vessel
2 chr10:22820200-22828000 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr10:22820600-22830000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr10:22820800-22828000 Weak transcription HSMMtube muscle
5 chr10:22822200-22834200 Strong transcription Primary T cells from cord blood blood
6 chr10:22822200-22856000 Weak transcription Small Intestine intestine
7 chr10:22822400-22833400 Strong transcription Primary T cells fromperipheralblood blood
8 chr10:22822800-22832600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr10:22822800-22833400 Strong transcription Primary hematopoietic stem cells short term culture blood
10 chr10:22822800-22870200 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr10:22823000-22844600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
12 chr10:22823200-22831200 Strong transcription Fetal Thymus thymus
13 chr10:22823400-22828800 Strong transcription GM12878-XiMat blood
14 chr10:22823400-22845200 Strong transcription Primary monocytes fromperipheralblood blood
15 chr10:22823600-22828200 Weak transcription NHDF-Ad bronchial
16 chr10:22823600-22842200 Weak transcription Colon Smooth Muscle Colon
17 chr10:22823800-22833800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr10:22823800-22845200 Strong transcription Primary T helper cells PMA-I stimulated --
19 chr10:22824000-22830000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr10:22824000-22833800 Strong transcription Primary B cells from peripheral blood blood
21 chr10:22824000-22844400 Strong transcription Primary B cells from cord blood blood
22 chr10:22824000-22844800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr10:22824000-22853000 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr10:22824200-22830000 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr10:22824200-22831600 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr10:22824200-22832000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr10:22824200-22833200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr10:22824200-22833600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr10:22824200-22839000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr10:22824200-22840000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
31 chr10:22824400-22828400 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr10:22824400-22836400 Weak transcription NHEK skin
33 chr10:22824400-22845400 Strong transcription Primary T regulatory cells fromperipheralblood blood
34 chr10:22824600-22836200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr10:22824800-22828800 Genic enhancers Brain Hippocampus Middle brain
36 chr10:22824800-22840800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr10:22825000-22830000 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr10:22825000-22830800 Strong transcription iPS-20b Cell Line embryonic stem cell
39 chr10:22825000-22832400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr10:22825000-22832800 Strong transcription Primary hematopoietic stem cells blood
41 chr10:22825000-22833200 Strong transcription Primary T killer naive cells fromperipheralblood blood
42 chr10:22825000-22833600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr10:22825000-22840200 Weak transcription Placenta Amnion Placenta Amnion
44 chr10:22825000-22840600 Strong transcription Primary neutrophils fromperipheralblood blood
45 chr10:22825000-22852800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr10:22825000-22863800 Weak transcription Hela-S3 cervix
47 chr10:22825200-22829200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr10:22825200-22829200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr10:22825200-22830600 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
50 chr10:22825200-22831800 Strong transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015