Variant report

Variant	rs16922450
Chromosome Location	chr10:22844107-22844108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22842794..22844375-chr10:22847508..22850217,2	K562	blood:
2	chr10:22836119..22838816-chr10:22841723..22844142,3	K562	blood:
3	chr10:22842052..22844962-chr10:22849749..22851809,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56229946	0.82[AFR][1000 genomes]
rs59428338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62640376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089954	1.00[ASW][hapmap];0.87[LWK][hapmap];0.90[AFR][1000 genomes]
rs7894486	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs7904655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7923540	0.87[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16922450	PIP5K2A	cis	multi-tissue	Pritchard
rs16922450	PIP4K2A	cis	lymphoblastoid	seeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
2	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
7	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
12	chr10:22825600-22888000	Weak transcription	HMEC	breast
13	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:22830600-22853000	Weak transcription	HUVEC	blood vessel
15	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:22831800-22852600	Weak transcription	A549	lung
18	chr10:22834000-22844200	Strong transcription	Primary hematopoietic stem cells	blood
19	chr10:22834200-22845400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:22834200-22845400	Strong transcription	GM12878-XiMat	blood
21	chr10:22834600-22844200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:22834800-22853200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:22835000-22844400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:22836800-22856200	Weak transcription	HepG2	liver
25	chr10:22837200-22848800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:22838000-22851600	Weak transcription	Spleen	Spleen
27	chr10:22839000-22859400	Strong transcription	Primary T cells from cord blood	blood
28	chr10:22839400-22855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:22839600-22851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:22839600-22853400	Weak transcription	NHEK	skin
31	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:22839800-22851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:22840200-22852600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:22840600-22844400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr10:22840600-22849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:22840800-22846400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:22840800-22848800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:22840800-22849400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:22840800-22849600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:22840800-22849600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:22840800-22853000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:22841000-22853800	Weak transcription	K562	blood
43	chr10:22841000-22855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:22841200-22852200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:22841200-22855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:22841800-22844200	Enhancers	Fetal Heart	heart
47	chr10:22842000-22844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:22842200-22844200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr10:22842200-22844200	Enhancers	Left Ventricle	heart
50	chr10:22842200-22844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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