Variant report
| Variant | rs28820979 |
|---|---|
| Chromosome Location | chr10:22801991-22801992 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SPAG6-2 | chr10:22801473-22802021 | l_269_chr10:22800768-22802021_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs10159727 | 1.00[ASN][1000 genomes] |
| rs10508646 | 1.00[ASN][1000 genomes] |
| rs10508647 | 1.00[ASN][1000 genomes] |
| rs10734041 | 1.00[ASN][1000 genomes] |
| rs10741004 | 1.00[ASN][1000 genomes] |
| rs11013007 | 1.00[ASN][1000 genomes] |
| rs11013013 | 1.00[ASN][1000 genomes] |
| rs11013015 | 1.00[ASN][1000 genomes] |
| rs11013016 | 1.00[ASN][1000 genomes] |
| rs11013026 | 1.00[ASN][1000 genomes] |
| rs11593715 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12247353 | 1.00[ASN][1000 genomes] |
| rs12258498 | 1.00[ASN][1000 genomes] |
| rs12264678 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12781081 | 1.00[ASN][1000 genomes] |
| rs1610340 | 1.00[ASN][1000 genomes] |
| rs16922359 | 1.00[ASN][1000 genomes] |
| rs17415557 | 1.00[ASN][1000 genomes] |
| rs1887093 | 1.00[ASN][1000 genomes] |
| rs4748809 | 1.00[ASN][1000 genomes] |
| rs55927891 | 1.00[ASN][1000 genomes] |
| rs56269206 | 1.00[ASN][1000 genomes] |
| rs56373296 | 1.00[ASN][1000 genomes] |
| rs56768929 | 1.00[ASN][1000 genomes] |
| rs57036965 | 1.00[ASN][1000 genomes] |
| rs57074189 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57920220 | 1.00[ASN][1000 genomes] |
| rs57965592 | 1.00[ASN][1000 genomes] |
| rs58253107 | 1.00[ASN][1000 genomes] |
| rs58402183 | 1.00[ASN][1000 genomes] |
| rs58554507 | 1.00[ASN][1000 genomes] |
| rs59759821 | 1.00[ASN][1000 genomes] |
| rs60327547 | 1.00[ASN][1000 genomes] |
| rs61377954 | 1.00[ASN][1000 genomes] |
| rs6482211 | 1.00[ASN][1000 genomes] |
| rs6482218 | 1.00[ASN][1000 genomes] |
| rs7078635 | 1.00[ASN][1000 genomes] |
| rs7084761 | 1.00[ASN][1000 genomes] |
| rs72814829 | 1.00[ASN][1000 genomes] |
| rs72814833 | 1.00[ASN][1000 genomes] |
| rs73598529 | 1.00[ASN][1000 genomes] |
| rs73598532 | 1.00[ASN][1000 genomes] |
| rs73598533 | 1.00[ASN][1000 genomes] |
| rs74123043 | 1.00[ASN][1000 genomes] |
| rs74123046 | 1.00[ASN][1000 genomes] |
| rs74123047 | 1.00[ASN][1000 genomes] |
| rs74123049 | 1.00[ASN][1000 genomes] |
| rs74123050 | 1.00[ASN][1000 genomes] |
| rs74123051 | 1.00[ASN][1000 genomes] |
| rs7919655 | 1.00[ASN][1000 genomes] |
| rs943192 | 1.00[ASN][1000 genomes] |
| rs943193 | 1.00[ASN][1000 genomes] |
| rs9787428 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22765800-22806600 | Weak transcription | Right Atrium | heart |
