Variant report

Variant	rs1778325
Chromosome Location	chr10:22920183-22920184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22919228..22920825-chr10:22969587..22972202,2	K562	blood:
2	chr10:22919642..22922438-chr10:22953063..22955588,2	K562	blood:
3	chr10:22919598..22921406-chr10:23000805..23002605,2	K562	blood:
4	chr10:22918230..22923281-chr10:22970702..22974726,7	K562	blood:
5	chr10:22916181..22917774-chr10:22919461..22921266,2	K562	blood:
6	chr10:22918306..22922347-chr10:23342805..23345758,6	K562	blood:
7	chr10:22917275..22920741-chr10:22954004..22956837,4	K562	blood:
8	chr10:22912929..22915969-chr10:22917754..22921150,3	MCF-7	breast:
9	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
10	chr10:22918237..22921332-chr10:22927250..22929087,3	K562	blood:
11	chr10:22918472..22921530-chr10:22924076..22926410,3	K562	blood:
12	chr10:22917566..22920351-chr10:22991227..22993855,2	K562	blood:
13	chr10:22918935..22920512-chr10:22949554..22952009,2	K562	blood:
14	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
15	chr10:22919945..22923144-chr10:22969627..22972363,3	MCF-7	breast:
16	chr10:22608686..22610938-chr10:22918301..22921257,2	K562	blood:
17	chr10:22919663..22921834-chr10:22923042..22924777,2	MCF-7	breast:
18	chr10:22918203..22920244-chr10:23002055..23005386,3	K562	blood:
19	chr10:22918208..22920899-chr10:23105511..23107568,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1171490	0.95[YRI][hapmap]
rs1171491	0.92[EUR][1000 genomes]
rs1171492	0.95[YRI][hapmap]
rs1171495	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1171498	0.92[EUR][1000 genomes]
rs1171508	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12241403	1.00[CEU][hapmap]
rs1326339	1.00[CEU][hapmap]
rs1326342	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359641	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1536333	1.00[CEU][hapmap]
rs1614387	0.95[YRI][hapmap]
rs1620658	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1627549	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1628535	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1750748	0.95[YRI][hapmap]
rs1750764	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750768	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750769	0.92[EUR][1000 genomes]
rs1750771	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750772	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778305	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1778309	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778312	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778319	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778320	0.92[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778322	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778328	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778334	0.87[YRI][hapmap]
rs1778335	0.95[YRI][hapmap]
rs1778341	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778345	0.95[YRI][hapmap]
rs2559519	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2559525	0.84[EUR][1000 genomes]
rs2559534	0.86[YRI][hapmap]
rs2798980	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7082472	1.00[CEU][hapmap]
rs943191	0.92[EUR][1000 genomes]
rs943196	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
5	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
6	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
9	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
10	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:22914200-22920200	Enhancers	Brain Anterior Caudate	brain
12	chr10:22915000-22921400	Weak transcription	Right Ventricle	heart
13	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
14	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:22915200-22920200	Weak transcription	Left Ventricle	heart
16	chr10:22915200-22924000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
20	chr10:22915400-22920400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:22915600-22920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:22916000-22925000	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:22916800-22920800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr10:22917400-22920600	Weak transcription	Liver	Liver
26	chr10:22917400-22920800	Enhancers	Brain Angular Gyrus	brain
27	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
28	chr10:22917800-22920400	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:22918200-22921000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:22918600-22920400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr10:22918600-22920800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:22918600-22920800	Weak transcription	Gastric	stomach
33	chr10:22918600-22920800	Flanking Active TSS	K562	blood
34	chr10:22918600-22921000	Enhancers	Fetal Thymus	thymus
35	chr10:22918600-22922000	Enhancers	Placenta	Placenta
36	chr10:22918800-22920400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:22918800-22920800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:22918800-22921000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr10:22918800-22921000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:22918800-22921200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr10:22918800-22921600	Enhancers	HepG2	liver
42	chr10:22918800-22922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr10:22919000-22920600	Enhancers	Adipose Nuclei	Adipose
44	chr10:22919000-22920600	Enhancers	Small Intestine	intestine
45	chr10:22919000-22920600	Enhancers	HUVEC	blood vessel
46	chr10:22919200-22921000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr10:22919200-22921200	Enhancers	NH-A	brain
48	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:22919400-22920200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:22919400-22920600	Enhancers	Sigmoid Colon	Sigmoid Colon

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