Variant report

Variant	rs12241403
Chromosome Location	chr10:22987957-22987958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22985915..22989188-chr10:23000335..23006013,6	MCF-7	breast:
2	chr10:22969619..22972565-chr10:22986340..22989561,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11013103	0.80[YRI][hapmap]
rs1171495	1.00[CEU][hapmap]
rs1171508	1.00[CEU][hapmap]
rs1326339	1.00[CEU][hapmap]
rs1326342	1.00[CEU][hapmap]
rs1359641	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs1359643	1.00[CEU][hapmap]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap]
rs16922592	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs1750764	1.00[CEU][hapmap]
rs1750765	1.00[CEU][hapmap]
rs1750766	1.00[CEU][hapmap]
rs1750767	1.00[CEU][hapmap]
rs1750768	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1750773	1.00[CEU][hapmap]
rs1750774	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1778305	1.00[CEU][hapmap]
rs1778309	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs1778313	1.00[CEU][hapmap]
rs1778321	1.00[CEU][hapmap]
rs1778322	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1778324	1.00[CEU][hapmap]
rs1778325	1.00[CEU][hapmap]
rs1778326	1.00[CEU][hapmap]
rs1778329	1.00[CEU][hapmap]
rs1778330	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs1778332	1.00[CEU][hapmap]
rs1778341	1.00[CEU][hapmap]
rs1778344	1.00[CEU][hapmap]
rs2559519	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2798980	1.00[CEU][hapmap]
rs7078635	1.00[CHD][hapmap]
rs7082472	1.00[CEU][hapmap]
rs943192	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
2	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
6	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:22974800-22988200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:22974800-22988400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
13	chr10:22976000-22989000	Weak transcription	Thymus	Thymus
14	chr10:22977200-22998400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:22977600-22999200	Weak transcription	Dnd41	blood
16	chr10:22978200-22988200	Weak transcription	Left Ventricle	heart
17	chr10:22980200-22988200	Weak transcription	Pancreas	Pancrea
18	chr10:22980200-22988200	Weak transcription	Spleen	Spleen
19	chr10:22980200-22993600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:22980400-22999000	Weak transcription	Lung	lung
21	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:22980600-22989000	Weak transcription	A549	lung
23	chr10:22980800-22988000	Weak transcription	Small Intestine	intestine
24	chr10:22980800-22989000	Weak transcription	HepG2	liver
25	chr10:22982200-22989000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:22983000-22989000	Weak transcription	Stomach Mucosa	stomach
27	chr10:22983000-22999000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:22983000-22999200	Weak transcription	HSMM	muscle
29	chr10:22983200-22988000	Weak transcription	NHDF-Ad	bronchial
30	chr10:22983200-22988200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:22983200-22988200	Weak transcription	Gastric	stomach
32	chr10:22983200-22989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:22983200-22989600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:22983200-22989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:22983200-22990400	Weak transcription	Primary B cells from cord blood	blood
36	chr10:22983200-22992400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:22983200-22999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:22983200-23001400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:22983400-22988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:22983400-22992800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:22983400-23000000	Weak transcription	NHLF	lung
44	chr10:22983600-22988200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:22983600-22988400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:22983600-22989000	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr10:22983600-22989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:22983600-22994400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:22984000-22989000	Enhancers	Brain Substantia Nigra	brain
50	chr10:22984600-22990200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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