Variant report

Variant	rs1326342
Chromosome Location	chr10:22916247-22916248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22916238..22918740-chr10:23000719..23005103,4	K562	blood:
2	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
3	chr10:22916181..22917774-chr10:22919461..22921266,2	K562	blood:
4	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
5	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1171490	0.95[YRI][hapmap]
rs1171491	0.83[EUR][1000 genomes]
rs1171492	0.95[YRI][hapmap]
rs1171495	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1171498	0.83[EUR][1000 genomes]
rs1171508	1.00[CEU][hapmap]
rs12241403	1.00[CEU][hapmap]
rs1326337	0.86[EUR][1000 genomes]
rs1326339	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1359641	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1536333	1.00[CEU][hapmap]
rs1614387	0.95[YRI][hapmap]
rs1620658	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1627549	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1628535	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap]
rs1750748	0.95[YRI][hapmap]
rs1750764	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750768	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750769	0.83[EUR][1000 genomes]
rs1750771	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750772	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778305	1.00[CEU][hapmap]
rs1778309	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778312	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778319	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778320	0.83[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778322	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778328	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778334	0.87[YRI][hapmap]
rs1778335	0.95[YRI][hapmap]
rs1778341	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778345	0.95[YRI][hapmap]
rs2559519	1.00[CEU][hapmap]
rs2559534	0.86[YRI][hapmap]
rs2798980	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7082472	1.00[CEU][hapmap]
rs943191	0.83[EUR][1000 genomes]
rs943196	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22906400-22918200	Enhancers	NHLF	lung
8	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
13	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
14	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
15	chr10:22910000-22916400	Enhancers	Brain Angular Gyrus	brain
16	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:22910600-22916400	Enhancers	Brain Substantia Nigra	brain
19	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
20	chr10:22911200-22917800	Enhancers	HepG2	liver
21	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
22	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:22912000-22916400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22912200-22916400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:22912200-22917000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:22912400-22916400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:22912400-22916400	Enhancers	Osteobl	bone
28	chr10:22912400-22917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:22912400-22917000	Enhancers	NH-A	brain
30	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:22912400-22918200	Enhancers	HSMM	muscle
32	chr10:22912600-22916400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr10:22912800-22917000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:22912800-22919000	Weak transcription	Lung	lung
37	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
38	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
39	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:22913200-22917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:22913200-22918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr10:22913400-22916800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood
45	chr10:22913600-22916800	Enhancers	A549	lung
46	chr10:22913600-22917600	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr10:22913600-22918200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:22913600-22919000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:22913800-22918200	Weak transcription	Dnd41	blood
50	chr10:22913800-22918600	Weak transcription	Monocytes-CD14+_RO01746	blood

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