Variant report

Variant	rs1750774
Chromosome Location	chr10:22927850-22927851
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22921231..22923695-chr10:22925990..22927982,2	MCF-7	breast:
2	chr10:22925448..22927926-chr10:22944270..22946510,2	MCF-7	breast:
3	chr10:22921849..22923633-chr10:22927048..22928723,2	MCF-7	breast:
4	chr10:22918237..22921332-chr10:22927250..22929087,3	K562	blood:
5	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1171491	0.92[EUR][1000 genomes]
rs1171495	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1171498	0.92[EUR][1000 genomes]
rs1171508	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12241403	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1326339	1.00[CEU][hapmap]
rs1326342	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1359641	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1627549	0.96[EUR][1000 genomes]
rs1628535	0.96[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1750743	0.85[EUR][1000 genomes]
rs1750764	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1750768	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1750769	0.92[EUR][1000 genomes]
rs1750771	0.96[EUR][1000 genomes]
rs1750772	0.96[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778305	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778306	0.85[EUR][1000 genomes]
rs1778309	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1778312	0.84[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778319	0.92[EUR][1000 genomes]
rs1778320	0.92[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778322	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778328	0.96[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778341	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2559519	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs2559525	0.84[EUR][1000 genomes]
rs2798980	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7078635	1.00[CHD][hapmap]
rs7082472	1.00[CEU][hapmap]
rs943191	0.92[EUR][1000 genomes]
rs943192	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
6	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
8	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
14	chr10:22920000-22931800	Weak transcription	NHLF	lung
15	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
19	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:22921000-22940400	Weak transcription	Ovary	ovary
25	chr10:22921200-22928200	Enhancers	Brain Angular Gyrus	brain
26	chr10:22921200-22928600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:22921600-22930000	Enhancers	Brain Hippocampus Middle	brain
30	chr10:22922800-22933000	Weak transcription	Lung	lung
31	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:22923200-22932400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
34	chr10:22923400-22929400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:22923600-22930800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:22924800-22932000	Weak transcription	Small Intestine	intestine
37	chr10:22925200-22929200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:22925200-22929400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:22925600-22931000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:22925600-22931800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:22925800-22928600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:22925800-22929200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:22925800-22929400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:22926200-22935200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:22926600-22930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:22926800-22928200	Enhancers	GM12878-XiMat	blood
48	chr10:22926800-22928800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:22926800-22929200	Weak transcription	Left Ventricle	heart
50	chr10:22926800-22929400	Weak transcription	Fetal Muscle Trunk	muscle

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