Variant report

Variant	rs1627549
Chromosome Location	chr10:22917449-22917450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22916238..22918740-chr10:23000719..23005103,4	K562	blood:
2	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
3	chr10:22916181..22917774-chr10:22919461..22921266,2	K562	blood:
4	chr10:22884698..22886751-chr10:22916434..22918083,2	K562	blood:
5	chr10:22917308..22919360-chr10:22991473..22993038,2	K562	blood:
6	chr10:22917275..22920741-chr10:22954004..22956837,4	K562	blood:
7	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
8	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
9	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1171491	0.96[EUR][1000 genomes]
rs1171495	0.96[EUR][1000 genomes]
rs1171498	0.96[EUR][1000 genomes]
rs1171504	0.89[YRI][hapmap]
rs1171508	0.88[EUR][1000 genomes]
rs1171509	0.87[YRI][hapmap]
rs12357289	0.88[YRI][hapmap]
rs1326339	0.81[AMR][1000 genomes]
rs1326342	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359641	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359643	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1409393	0.94[YRI][hapmap]
rs1409395	1.00[YRI][hapmap]
rs1620658	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1628535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922592	0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs1750743	0.82[EUR][1000 genomes]
rs1750764	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750765	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750766	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750767	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750768	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750769	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750772	1.00[EUR][1000 genomes]
rs1750773	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750774	0.96[EUR][1000 genomes]
rs1750777	1.00[YRI][hapmap]
rs1778305	0.84[EUR][1000 genomes]
rs1778306	0.82[EUR][1000 genomes]
rs1778309	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778312	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778313	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1778319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778320	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778321	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778322	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778324	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778325	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778326	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778328	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778330	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778332	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778338	0.83[YRI][hapmap]
rs1778339	0.94[YRI][hapmap]
rs1778340	0.94[YRI][hapmap]
rs1778341	0.96[EUR][1000 genomes]
rs1778344	1.00[EUR][1000 genomes]
rs1778346	0.87[YRI][hapmap]
rs1778347	1.00[YRI][hapmap]
rs2559519	0.84[EUR][1000 genomes]
rs2559525	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2798980	0.96[EUR][1000 genomes]
rs2798981	1.00[YRI][hapmap]
rs943191	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22906400-22918200	Enhancers	NHLF	lung
8	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
13	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
14	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
17	chr10:22911200-22917800	Enhancers	HepG2	liver
18	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
19	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:22912400-22918200	Enhancers	HSMM	muscle
22	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:22912800-22919000	Weak transcription	Lung	lung
25	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
26	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
27	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:22913200-22917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:22913200-22918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood
32	chr10:22913600-22917600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr10:22913600-22918200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:22913600-22919000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:22913800-22918200	Weak transcription	Dnd41	blood
36	chr10:22913800-22918600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:22913800-22918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:22913800-22919000	Weak transcription	Adipose Nuclei	Adipose
39	chr10:22913800-22919400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:22914200-22920200	Enhancers	Brain Anterior Caudate	brain
41	chr10:22914400-22918200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:22914400-22920000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:22914600-22919200	Enhancers	Primary B cells from peripheral blood	blood
44	chr10:22914800-22918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:22914800-22918800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:22915000-22917800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:22915000-22918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr10:22915000-22919000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:22915000-22919800	Weak transcription	Ovary	ovary
50	chr10:22915000-22921400	Weak transcription	Right Ventricle	heart

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