Variant report

Variant	rs1778309
Chromosome Location	chr10:22913162-22913163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22911051..22913869-chr10:23344433..23348720,3	K562	blood:
2	chr10:22897477..22901298-chr10:22912360..22915668,3	K562	blood:
3	chr10:22910882..22913408-chr10:23001985..23003913,2	K562	blood:
4	chr10:22912929..22915969-chr10:22917754..22921150,3	MCF-7	breast:
5	chr10:22911464..22914418-chr10:23001994..23003739,2	MCF-7	breast:
6	chr10:22912213..22914953-chr10:22971125..22973700,2	MCF-7	breast:
7	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:
8	chr10:22878584..22881570-chr10:22912031..22913638,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1171491	0.83[EUR][1000 genomes]
rs1171495	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1171498	0.83[EUR][1000 genomes]
rs1171504	0.87[YRI][hapmap]
rs1171508	1.00[CEU][hapmap]
rs1171509	0.81[YRI][hapmap]
rs12241403	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs12357289	0.87[YRI][hapmap]
rs1326337	0.86[EUR][1000 genomes]
rs1326339	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1326342	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359641	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1409393	1.00[YRI][hapmap]
rs1409395	0.93[YRI][hapmap]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1627549	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1628535	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.87[YRI][hapmap]
rs1750764	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1750768	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750769	0.83[EUR][1000 genomes]
rs1750771	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750772	0.88[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1750777	0.93[YRI][hapmap]
rs1778305	1.00[CEU][hapmap]
rs1778312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778319	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778320	0.83[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778322	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778328	0.88[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778338	0.88[YRI][hapmap]
rs1778339	1.00[YRI][hapmap]
rs1778340	1.00[YRI][hapmap]
rs1778341	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778346	0.85[YRI][hapmap]
rs1778347	0.93[YRI][hapmap]
rs2559519	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2765993	0.84[LWK][hapmap]
rs2798980	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2798981	0.93[YRI][hapmap]
rs7078635	1.00[CHD][hapmap]
rs7082472	1.00[CEU][hapmap]
rs943191	0.83[EUR][1000 genomes]
rs943192	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
9	chr10:22905400-22913800	Enhancers	Brain Anterior Caudate	brain
10	chr10:22905400-22914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:22905400-22915400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:22906400-22918200	Enhancers	NHLF	lung
13	chr10:22906600-22913600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:22907800-22914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:22908000-22913200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:22908000-22914400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
20	chr10:22908600-22914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:22908800-22916200	Weak transcription	Liver	Liver
22	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:22909000-22913600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:22909400-22913600	Enhancers	Fetal Thymus	thymus
25	chr10:22909600-22913400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
27	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
28	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
29	chr10:22910000-22913200	Enhancers	A549	lung
30	chr10:22910000-22913600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:22910000-22914000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:22910000-22914800	Weak transcription	Psoas Muscle	Psoas
33	chr10:22910000-22916200	Weak transcription	Stomach Mucosa	stomach
34	chr10:22910000-22916400	Enhancers	Brain Angular Gyrus	brain
35	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:22910200-22913200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:22910200-22913400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:22910200-22914400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:22910200-22914400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:22910200-22914600	Weak transcription	Right Ventricle	heart
41	chr10:22910200-22915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:22910400-22914600	Weak transcription	Fetal Heart	heart
44	chr10:22910600-22914600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:22910600-22916400	Enhancers	Brain Substantia Nigra	brain
46	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
47	chr10:22910800-22913200	Enhancers	Brain Germinal Matrix	brain
48	chr10:22910800-22914600	Weak transcription	GM12878-XiMat	blood
49	chr10:22911000-22913400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:22911200-22914600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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