Variant report

Variant	rs1778312
Chromosome Location	chr10:22914954-22914955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22897477..22901298-chr10:22912360..22915668,3	K562	blood:
2	chr10:22906504..22909168-chr10:22914292..22915841,2	MCF-7	breast:
3	chr10:22912929..22915969-chr10:22917754..22921150,3	MCF-7	breast:
4	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1171491	0.83[EUR][1000 genomes]
rs1171495	0.83[EUR][1000 genomes]
rs1171498	0.83[EUR][1000 genomes]
rs1326337	0.86[EUR][1000 genomes]
rs1326339	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1326342	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359641	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359643	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1620658	0.88[EUR][1000 genomes]
rs1627549	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1628535	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750765	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750766	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750767	0.88[EUR][1000 genomes]
rs1750768	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750769	0.83[EUR][1000 genomes]
rs1750771	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750772	0.88[EUR][1000 genomes]
rs1750773	0.88[EUR][1000 genomes]
rs1750774	0.84[EUR][1000 genomes]
rs1778309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778319	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778320	0.83[EUR][1000 genomes]
rs1778321	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778322	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778324	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778325	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778326	0.84[EUR][1000 genomes]
rs1778328	0.88[EUR][1000 genomes]
rs1778329	0.88[EUR][1000 genomes]
rs1778330	0.88[EUR][1000 genomes]
rs1778332	0.88[EUR][1000 genomes]
rs1778341	0.83[EUR][1000 genomes]
rs1778344	0.88[EUR][1000 genomes]
rs2798980	0.83[EUR][1000 genomes]
rs943191	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22905400-22915400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:22906400-22918200	Enhancers	NHLF	lung
9	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
12	chr10:22908800-22916200	Weak transcription	Liver	Liver
13	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
15	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
16	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
17	chr10:22910000-22916200	Weak transcription	Stomach Mucosa	stomach
18	chr10:22910000-22916400	Enhancers	Brain Angular Gyrus	brain
19	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:22910200-22915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:22910600-22916400	Enhancers	Brain Substantia Nigra	brain
23	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
24	chr10:22911200-22917800	Enhancers	HepG2	liver
25	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
26	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:22911800-22915000	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:22912000-22916400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:22912200-22915000	Enhancers	K562	blood
30	chr10:22912200-22915400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:22912200-22916200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:22912200-22916400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr10:22912200-22917000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr10:22912400-22915200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:22912400-22916200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:22912400-22916400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:22912400-22916400	Enhancers	Osteobl	bone
38	chr10:22912400-22917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr10:22912400-22917000	Enhancers	NH-A	brain
40	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:22912400-22918200	Enhancers	HSMM	muscle
42	chr10:22912600-22916200	Weak transcription	Small Intestine	intestine
43	chr10:22912600-22916400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:22912800-22915200	Enhancers	Fetal Lung	lung
47	chr10:22912800-22917000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:22912800-22919000	Weak transcription	Lung	lung
49	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
50	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea

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