Variant report

Variant	rs1778328
Chromosome Location	chr10:22925382-22925383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22918472..22921530-chr10:22924076..22926410,3	K562	blood:
2	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
3	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1171491	0.96[EUR][1000 genomes]
rs1171495	0.96[EUR][1000 genomes]
rs1171498	0.96[EUR][1000 genomes]
rs1171508	0.88[EUR][1000 genomes]
rs1326342	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359641	0.88[EUR][1000 genomes]
rs1359643	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1620658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1628535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922592	0.84[EUR][1000 genomes]
rs1750743	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750764	0.88[EUR][1000 genomes]
rs1750765	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750766	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750767	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750768	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750769	0.96[EUR][1000 genomes]
rs1750771	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750772	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750774	0.96[EUR][1000 genomes]
rs1778305	0.84[EUR][1000 genomes]
rs1778306	0.82[EUR][1000 genomes]
rs1778309	0.88[EUR][1000 genomes]
rs1778312	0.88[EUR][1000 genomes]
rs1778313	0.88[EUR][1000 genomes]
rs1778319	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778320	0.96[EUR][1000 genomes]
rs1778321	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778322	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778324	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778325	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778326	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778329	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778341	0.96[EUR][1000 genomes]
rs1778344	1.00[EUR][1000 genomes]
rs2559519	0.84[EUR][1000 genomes]
rs2559525	0.88[EUR][1000 genomes]
rs2798980	0.96[EUR][1000 genomes]
rs7096504	1.00[ASN][1000 genomes]
rs73598596	1.00[ASN][1000 genomes]
rs943191	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
3	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
5	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
9	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
11	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:22920000-22925400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:22920000-22927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
19	chr10:22920000-22931800	Weak transcription	NHLF	lung
20	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:22920200-22925600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:22920200-22927600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
26	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:22921000-22925800	Weak transcription	Fetal Thymus	thymus
30	chr10:22921000-22926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:22921000-22940400	Weak transcription	Ovary	ovary
34	chr10:22921200-22928200	Enhancers	Brain Angular Gyrus	brain
35	chr10:22921200-22928600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:22921600-22925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:22921600-22926400	Weak transcription	HepG2	liver
40	chr10:22921600-22930000	Enhancers	Brain Hippocampus Middle	brain
41	chr10:22922000-22926000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr10:22922200-22926400	Weak transcription	Left Ventricle	heart
43	chr10:22922400-22925800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr10:22922800-22926400	Weak transcription	Right Ventricle	heart
45	chr10:22922800-22933000	Weak transcription	Lung	lung
46	chr10:22923000-22925600	Enhancers	Primary T cells from cord blood	blood
47	chr10:22923000-22925600	Weak transcription	Right Atrium	heart
48	chr10:22923000-22926400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:22923000-22927400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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