Variant report

Variant	rs1778322
Chromosome Location	chr10:22918613-22918614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22916238..22918740-chr10:23000719..23005103,4	K562	blood:
2	chr10:22918230..22923281-chr10:22970702..22974726,7	K562	blood:
3	chr10:22917308..22919360-chr10:22991473..22993038,2	K562	blood:
4	chr10:22918306..22922347-chr10:23342805..23345758,6	K562	blood:
5	chr10:22917275..22920741-chr10:22954004..22956837,4	K562	blood:
6	chr10:22912929..22915969-chr10:22917754..22921150,3	MCF-7	breast:
7	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
8	chr10:22918237..22921332-chr10:22927250..22929087,3	K562	blood:
9	chr10:22918472..22921530-chr10:22924076..22926410,3	K562	blood:
10	chr10:22917566..22920351-chr10:22991227..22993855,2	K562	blood:
11	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
12	chr10:22608686..22610938-chr10:22918301..22921257,2	K562	blood:
13	chr10:22918203..22920244-chr10:23002055..23005386,3	K562	blood:
14	chr10:22918208..22920899-chr10:23105511..23107568,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1171491	0.92[EUR][1000 genomes]
rs1171495	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1171498	0.92[EUR][1000 genomes]
rs1171504	0.94[YRI][hapmap]
rs1171508	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1171509	0.87[YRI][hapmap]
rs12241403	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12357289	0.93[YRI][hapmap]
rs1326339	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1326342	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359641	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1409393	0.94[YRI][hapmap]
rs1409395	1.00[YRI][hapmap]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1627549	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1628535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs1750764	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750768	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750769	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1750771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750772	0.96[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1750777	1.00[YRI][hapmap]
rs1778305	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1778309	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778312	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778320	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778328	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778338	0.83[YRI][hapmap]
rs1778339	0.94[YRI][hapmap]
rs1778340	0.94[YRI][hapmap]
rs1778341	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778346	0.93[YRI][hapmap]
rs1778347	1.00[YRI][hapmap]
rs2559519	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs2559520	0.83[LWK][hapmap]
rs2559525	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2798980	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2798981	1.00[YRI][hapmap]
rs7078635	1.00[CHD][hapmap]
rs7082472	1.00[CEU][hapmap]
rs943191	0.92[EUR][1000 genomes]
rs943192	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
5	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
8	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
10	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:22912800-22919000	Weak transcription	Lung	lung
14	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
15	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
16	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood
19	chr10:22913600-22919000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:22913800-22918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:22913800-22919000	Weak transcription	Adipose Nuclei	Adipose
22	chr10:22913800-22919400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:22914200-22920200	Enhancers	Brain Anterior Caudate	brain
24	chr10:22914400-22920000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:22914600-22919200	Enhancers	Primary B cells from peripheral blood	blood
26	chr10:22914800-22918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:22914800-22918800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:22915000-22918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr10:22915000-22919000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:22915000-22919800	Weak transcription	Ovary	ovary
31	chr10:22915000-22921400	Weak transcription	Right Ventricle	heart
32	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
33	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:22915200-22919400	Weak transcription	Fetal Lung	lung
35	chr10:22915200-22919800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:22915200-22920200	Weak transcription	Left Ventricle	heart
37	chr10:22915200-22924000	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
41	chr10:22915400-22920400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:22915600-22918800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:22915600-22919400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:22915600-22920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:22916000-22925000	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:22916200-22919200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:22916200-22919200	Weak transcription	Hela-S3	cervix
49	chr10:22916400-22918800	Weak transcription	Osteobl	bone
50	chr10:22916400-22919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links