Variant report

Variant	rs2765993
Chromosome Location	chr10:22889530-22889531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22888870..22890376-chr10:22897120..22899767,2	MCF-7	breast:
2	chr10:22887097..22891017-chr10:22894744..22899143,5	K562	blood:
3	chr10:22883237..22885800-chr10:22888806..22890802,2	MCF-7	breast:
4	chr10:22887962..22890851-chr10:22904163..22906680,2	K562	blood:
5	chr10:22882953..22885596-chr10:22887639..22890414,2	K562	blood:
6	chr10:22887541..22890233-chr10:22900677..22902748,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10159847	0.85[CHD][hapmap];0.87[GIH][hapmap]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062190	0.81[GIH][hapmap]
rs10764338	0.81[GIH][hapmap]
rs10828320	1.00[CHB][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes]
rs1631873	0.91[GIH][hapmap]
rs1750770	0.91[GIH][hapmap]
rs1778302	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1778309	0.84[LWK][hapmap]
rs1778317	0.95[GIH][hapmap]
rs1778352	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559520	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559522	0.84[EUR][1000 genomes]
rs2559523	0.95[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2559524	0.95[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2559529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765995	0.83[EUR][1000 genomes]
rs2765996	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs2913109	0.80[CEU][hapmap];0.95[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs4498874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7075433	1.00[CHB][hapmap];0.84[GIH][hapmap];0.82[AMR][1000 genomes]
rs7093543	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7099102	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72816826	0.84[ASN][1000 genomes]
rs7900517	0.88[CEU][hapmap];0.89[ASN][1000 genomes]
rs7907744	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:22870400-22895200	Weak transcription	HepG2	liver
8	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
10	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:22880200-22890000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:22880200-22893400	Weak transcription	Ovary	ovary
17	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
22	chr10:22880400-22896600	Weak transcription	Liver	Liver
23	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose
25	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
26	chr10:22881600-22890200	Weak transcription	Right Atrium	heart
27	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:22882200-22890200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:22885200-22891200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:22885400-22890400	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:22885600-22889600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr10:22885600-22891000	Genic enhancers	Primary T cells from cord blood	blood
39	chr10:22885800-22889800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:22885800-22890200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:22885800-22891000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:22886000-22890600	Weak transcription	Fetal Heart	heart
43	chr10:22886200-22890000	Enhancers	Brain Hippocampus Middle	brain
44	chr10:22886200-22890600	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:22886200-22892000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:22886200-22893800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr10:22886400-22890200	Weak transcription	Left Ventricle	heart
48	chr10:22886400-22892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22886400-22894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle

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