Variant report

Variant	rs2765996
Chromosome Location	chr10:22894491-22894492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22892740..22895922-chr10:23342638..23345686,4	K562	blood:
2	chr10:22894422..22896822-chr10:23343724..23345259,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159847	0.85[CHD][hapmap];0.91[GIH][hapmap]
rs10218845	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828320	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs1631873	0.95[GIH][hapmap]
rs1750752	0.81[EUR][1000 genomes]
rs1750759	0.86[EUR][1000 genomes]
rs1750770	0.87[GIH][hapmap]
rs1778302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1778317	0.91[GIH][hapmap]
rs1778351	0.82[EUR][1000 genomes]
rs1778352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559522	0.93[EUR][1000 genomes]
rs2559523	0.91[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2559524	0.91[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2559529	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765993	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765995	0.92[EUR][1000 genomes]
rs2913108	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2913109	0.91[GIH][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs4498874	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748819	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072792	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7075433	1.00[CHB][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes]
rs7076685	1.00[YRI][hapmap]
rs7084619	0.87[YRI][hapmap]
rs7093543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7099102	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72816826	0.84[ASN][1000 genomes]
rs7900517	0.89[ASN][1000 genomes]
rs7907744	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.89[ASN][1000 genomes]
rs7916957	0.80[GIH][hapmap]
rs7918943	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22870400-22895200	Weak transcription	HepG2	liver
6	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:22880400-22896600	Weak transcription	Liver	Liver
12	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:22886400-22894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
17	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:22888600-22895000	Weak transcription	Placenta	Placenta
19	chr10:22888800-22895200	Weak transcription	A549	lung
20	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:22889000-22895400	Weak transcription	K562	blood
23	chr10:22889000-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
25	chr10:22889800-22896000	Weak transcription	Aorta	Aorta
26	chr10:22890800-22896200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:22891000-22895200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:22891000-22896200	Weak transcription	Fetal Heart	heart
29	chr10:22891000-22896800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:22891000-22897000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:22891000-22901400	Weak transcription	Gastric	stomach
32	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
33	chr10:22891200-22904800	Weak transcription	NHLF	lung
34	chr10:22891600-22897600	Weak transcription	Left Ventricle	heart
35	chr10:22891800-22895200	Enhancers	Brain Hippocampus Middle	brain
36	chr10:22892200-22895000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr10:22892200-22895200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:22892200-22895400	Enhancers	Primary B cells from peripheral blood	blood
39	chr10:22892200-22895400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:22892400-22894600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:22892400-22895200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr10:22892400-22896200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:22892600-22896400	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:22892800-22895400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:22893200-22896600	Genic enhancers	Primary T cells from cord blood	blood
46	chr10:22893200-22897000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr10:22893400-22894600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr10:22893400-22894600	Strong transcription	Dnd41	blood
49	chr10:22893400-22894600	Enhancers	NHDF-Ad	bronchial
50	chr10:22893400-22894800	Enhancers	Adipose Nuclei	Adipose

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