Variant report

Variant	rs7907744
Chromosome Location	chr10:22882032-22882033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:22881977-22882286	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22881423..22883743-chr10:22885437..22887550,3	MCF-7	breast:

Variant related genes	Relation type
PIP4K2A	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10159847	0.83[GIH][hapmap]
rs10218845	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1062190	0.84[GIH][hapmap];0.80[TSI][hapmap]
rs10764338	0.84[GIH][hapmap];0.80[TSI][hapmap]
rs10828320	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013103	0.83[CHD][hapmap]
rs11013105	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs1631873	0.83[CHD][hapmap];0.87[GIH][hapmap]
rs1778302	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.94[ASN][1000 genomes]
rs1778317	0.83[CHD][hapmap];0.83[GIH][hapmap]
rs1778352	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2559520	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559523	0.83[GIH][hapmap];0.81[TSI][hapmap]
rs2559524	0.83[GIH][hapmap];0.81[TSI][hapmap]
rs2559529	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2765993	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2765996	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.89[ASN][1000 genomes]
rs2913108	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2913109	0.83[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs4498874	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748819	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075433	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.88[ASN][1000 genomes]
rs7093543	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7099102	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816826	0.94[ASN][1000 genomes]
rs7900517	1.00[ASN][1000 genomes]
rs7916957	0.88[GIH][hapmap];0.80[TSI][hapmap]
rs7918943	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
6	chr10:22854200-22887400	Weak transcription	NHEK	skin
7	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
11	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
12	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:22862200-22885800	Weak transcription	NHLF	lung
14	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
15	chr10:22862400-22887400	Weak transcription	A549	lung
16	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:22864000-22882400	Strong transcription	Primary T cells from cord blood	blood
19	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:22870000-22885600	Weak transcription	NH-A	brain
22	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:22870400-22895200	Weak transcription	HepG2	liver
24	chr10:22871200-22882200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:22871200-22882600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:22872000-22887600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
28	chr10:22875400-22882200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:22875800-22888000	Weak transcription	Stomach Mucosa	stomach
30	chr10:22876200-22882200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr10:22876400-22882200	Strong transcription	Dnd41	blood
32	chr10:22876600-22885600	Strong transcription	GM12878-XiMat	blood
33	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
34	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
35	chr10:22877600-22882800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:22878600-22886000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:22878800-22882200	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:22879000-22882200	Strong transcription	Fetal Stomach	stomach
40	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
41	chr10:22879200-22882200	Strong transcription	Brain Cingulate Gyrus	brain
42	chr10:22879400-22885400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:22879400-22888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:22879600-22887400	Weak transcription	HUVEC	blood vessel
45	chr10:22880000-22882400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:22880000-22885400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22880000-22886000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:22880000-22887400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links