Variant report

Variant	rs10764338
Chromosome Location	chr10:22866892-22866893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22866106..22869303-chr10:23343034..23346067,3	K562	blood:
2	chr10:22865070..22867317-chr10:22940531..22942326,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10508649	0.91[LWK][hapmap];0.82[AFR][1000 genomes]
rs1062190	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828320	0.96[GIH][hapmap]
rs11013054	0.88[JPT][hapmap]
rs11013110	1.00[JPT][hapmap]
rs1171496	0.86[JPT][hapmap]
rs1171505	1.00[JPT][hapmap]
rs12254366	0.85[ASN][1000 genomes]
rs12261508	0.88[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1326338	0.85[ASN][1000 genomes]
rs1326341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16922479	0.88[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1750752	0.85[ASN][1000 genomes]
rs1750756	0.88[JPT][hapmap]
rs1750757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750758	0.88[JPT][hapmap]
rs1750760	0.87[ASN][1000 genomes]
rs1750770	0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs1778302	0.81[GIH][hapmap]
rs1778303	0.88[JPT][hapmap]
rs1778304	0.86[JPT][hapmap]
rs1778351	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1778356	0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2559520	0.81[GIH][hapmap]
rs2559522	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2559523	1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2559524	1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs2765993	0.81[GIH][hapmap]
rs2765995	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2798982	0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2913109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6482229	0.88[JPT][hapmap]
rs7071450	0.88[JPT][hapmap]
rs7075433	0.80[CEU][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs7094187	1.00[JPT][hapmap]
rs7095020	1.00[JPT][hapmap]
rs7098460	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7907744	0.84[GIH][hapmap];0.80[TSI][hapmap]
rs7912144	0.80[CEU][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7916957	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825600-22888000	Weak transcription	HMEC	breast
3	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
5	chr10:22844200-22876200	Weak transcription	Ovary	ovary
6	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
15	chr10:22853800-22876200	Weak transcription	Osteobl	bone
16	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
17	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
19	chr10:22854200-22887400	Weak transcription	NHEK	skin
20	chr10:22854600-22867400	Weak transcription	Fetal Brain Female	brain
21	chr10:22855200-22871000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:22856000-22870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:22856600-22869800	Weak transcription	NH-A	brain
27	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
30	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:22857400-22872200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:22857600-22869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
34	chr10:22859000-22871600	Strong transcription	K562	blood
35	chr10:22860000-22869600	Weak transcription	Psoas Muscle	Psoas
36	chr10:22860400-22871000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:22860600-22871200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:22860600-22878000	Weak transcription	Fetal Brain Male	brain
40	chr10:22861000-22871000	Strong transcription	Fetal Stomach	stomach
41	chr10:22861400-22869600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:22862200-22869400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:22862200-22870000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:22862200-22876800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
46	chr10:22862200-22885800	Weak transcription	NHLF	lung
47	chr10:22862400-22869600	Weak transcription	Left Ventricle	heart
48	chr10:22862400-22879000	Weak transcription	Fetal Lung	lung
49	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
50	chr10:22862400-22887400	Weak transcription	A549	lung

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