Variant report

Variant	rs1750770
Chromosome Location	chr10:22926993-22926994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22921231..22923695-chr10:22925990..22927982,2	MCF-7	breast:
2	chr10:22925448..22927926-chr10:22944270..22946510,2	MCF-7	breast:
3	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
4	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10159847	0.84[CEU][hapmap];0.87[GIH][hapmap];0.96[TSI][hapmap]
rs1062190	0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs10764338	0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs11013054	0.88[JPT][hapmap]
rs11013103	0.89[TSI][hapmap]
rs11013104	0.92[CEU][hapmap];0.89[CHD][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap]
rs11013105	0.89[TSI][hapmap]
rs11013110	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1171496	0.86[JPT][hapmap]
rs1171505	0.80[CHD][hapmap];1.00[JPT][hapmap]
rs12261508	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1326341	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1359642	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1624192	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs1626919	0.89[EUR][1000 genomes]
rs1631873	0.91[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs16922479	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1750756	0.88[JPT][hapmap]
rs1750757	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1750758	0.88[JPT][hapmap]
rs1778302	0.91[GIH][hapmap]
rs1778303	0.88[JPT][hapmap]
rs1778304	0.86[JPT][hapmap]
rs1778317	0.96[GIH][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs1778327	0.89[EUR][1000 genomes]
rs1778351	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1778356	0.88[JPT][hapmap]
rs2559520	0.91[GIH][hapmap]
rs2559522	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2559523	0.86[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap]
rs2559524	0.86[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap]
rs2559529	0.87[GIH][hapmap]
rs2765993	0.91[GIH][hapmap]
rs2765995	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2765996	0.87[GIH][hapmap]
rs2798982	0.88[JPT][hapmap]
rs2913109	0.86[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap]
rs6482227	0.83[CEU][hapmap];0.92[TSI][hapmap]
rs6482229	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7071450	0.88[JPT][hapmap]
rs7094187	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7095020	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7098460	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7912144	0.88[JPT][hapmap]
rs7916957	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1750770	ARL5B	cis	cerebellum	SCAN

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
6	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
8	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:22920000-22927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
15	chr10:22920000-22931800	Weak transcription	NHLF	lung
16	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:22920200-22927600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
21	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:22921000-22940400	Weak transcription	Ovary	ovary
27	chr10:22921200-22928200	Enhancers	Brain Angular Gyrus	brain
28	chr10:22921200-22928600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:22921600-22930000	Enhancers	Brain Hippocampus Middle	brain
32	chr10:22922800-22933000	Weak transcription	Lung	lung
33	chr10:22923000-22927400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:22923200-22932400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
37	chr10:22923400-22929400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:22923600-22930800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:22924800-22932000	Weak transcription	Small Intestine	intestine
40	chr10:22925200-22929200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:22925200-22929400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr10:22925400-22927000	Enhancers	Brain Cingulate Gyrus	brain
43	chr10:22925600-22931000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:22925600-22931800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:22925800-22927000	Genic enhancers	Primary T cells from cord blood	blood
46	chr10:22925800-22927400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr10:22925800-22928600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:22925800-22929200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:22925800-22929400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood

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