Variant report

Variant	rs12261508
Chromosome Location	chr10:22862716-22862717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22861092..22863092-chr10:22944384..22945902,2	K562	blood:
2	chr10:22862078..22866092-chr10:23001669..23004952,3	MCF-7	breast:
3	chr10:22856169..22859441-chr10:22860666..22863498,3	K562	blood:
4	chr10:22857941..22860806-chr10:22861739..22864116,2	K562	blood:
5	chr10:22862423..22863518-chr10:23277420..23278159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1062190	0.83[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10764338	0.88[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11013054	0.88[JPT][hapmap]
rs11013110	1.00[JPT][hapmap]
rs1171496	0.86[JPT][hapmap]
rs1171505	1.00[JPT][hapmap]
rs12254366	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326338	0.83[ASN][1000 genomes]
rs1326341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16922479	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750752	0.83[ASN][1000 genomes]
rs1750756	0.88[JPT][hapmap]
rs1750757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750758	0.88[JPT][hapmap]
rs1750760	0.85[ASN][1000 genomes]
rs1750770	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1778303	0.88[JPT][hapmap]
rs1778304	0.86[JPT][hapmap]
rs1778351	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778356	0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2559522	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2559523	1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2559524	1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2765995	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2798982	0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2913109	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482229	0.88[JPT][hapmap]
rs7071450	0.88[JPT][hapmap]
rs7093543	0.84[GIH][hapmap]
rs7094187	1.00[JPT][hapmap]
rs7095020	1.00[JPT][hapmap]
rs7098460	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs7912144	1.00[CEU][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7916957	0.88[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
3	chr10:22825600-22888000	Weak transcription	HMEC	breast
4	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
7	chr10:22844200-22876200	Weak transcription	Ovary	ovary
8	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
19	chr10:22853800-22876200	Weak transcription	Osteobl	bone
20	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
21	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:22854200-22866400	Weak transcription	Liver	Liver
23	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
24	chr10:22854200-22887400	Weak transcription	NHEK	skin
25	chr10:22854600-22867400	Weak transcription	Fetal Brain Female	brain
26	chr10:22854800-22862800	Strong transcription	Primary B cells from cord blood	blood
27	chr10:22855200-22871000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:22856000-22863200	Strong transcription	Dnd41	blood
32	chr10:22856000-22870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:22856600-22869800	Weak transcription	NH-A	brain
34	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:22856800-22865600	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:22857000-22862800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
39	chr10:22857200-22866200	Weak transcription	Gastric	stomach
40	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:22857400-22872200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:22857600-22865800	Weak transcription	Lung	lung
43	chr10:22857600-22866200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:22857600-22869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:22857800-22863200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr10:22857800-22866000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:22858200-22866200	Weak transcription	Esophagus	oesophagus
48	chr10:22858200-22866400	Weak transcription	Aorta	Aorta
49	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
50	chr10:22858400-22864600	Weak transcription	Fetal Intestine Small	intestine

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