Variant report

Variant	rs1171505
Chromosome Location	chr10:22951650-22951651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22949069..22952747-chr10:22952895..22957056,4	K562	blood:
2	chr10:22947010..22949481-chr10:22949817..22951993,3	K562	blood:
3	chr10:22918935..22920512-chr10:22949554..22952009,2	K562	blood:
4	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1062190	1.00[JPT][hapmap]
rs10764338	1.00[JPT][hapmap]
rs11013054	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11013095	0.88[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs11013110	1.00[JPT][hapmap]
rs1171496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171500	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1171502	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12261508	1.00[JPT][hapmap]
rs1326341	1.00[JPT][hapmap]
rs1409397	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs16922479	1.00[JPT][hapmap]
rs1750747	0.80[CHD][hapmap]
rs1750750	0.80[CEU][hapmap]
rs1750754	0.84[CEU][hapmap]
rs1750756	0.84[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1750757	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1750758	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs1750770	0.80[CHD][hapmap];1.00[JPT][hapmap]
rs1750775	0.80[CHD][hapmap];0.81[ASN][1000 genomes]
rs1778303	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs1778304	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1778331	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.83[TSI][hapmap]
rs1778342	0.81[ASN][1000 genomes]
rs1778351	1.00[JPT][hapmap]
rs1778353	0.81[CEU][hapmap];0.95[CHD][hapmap];0.83[TSI][hapmap]
rs1778355	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs1778356	0.88[JPT][hapmap]
rs2256542	0.81[EUR][1000 genomes]
rs2559522	0.88[JPT][hapmap]
rs2559523	0.88[JPT][hapmap]
rs2559524	0.86[JPT][hapmap]
rs2559526	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs2559527	0.90[CHB][hapmap]
rs2559528	0.87[CHB][hapmap]
rs2765994	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs2765995	0.88[JPT][hapmap]
rs2765997	0.81[TSI][hapmap]
rs2766001	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798982	0.88[JPT][hapmap]
rs2913109	0.88[JPT][hapmap]
rs2913110	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs6482229	0.88[JPT][hapmap]
rs7071450	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs7094187	1.00[JPT][hapmap]
rs7095020	1.00[JPT][hapmap]
rs7098460	0.88[JPT][hapmap]
rs7099314	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap]
rs754822	0.83[CEU][hapmap]
rs7912144	0.88[JPT][hapmap]
rs7916957	1.00[JPT][hapmap]
rs943194	0.83[EUR][1000 genomes]
rs943195	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
3	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
6	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
7	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
8	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
9	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
11	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:22945000-22956800	Weak transcription	Gastric	stomach
17	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
21	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
22	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
24	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
26	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:22947200-22954200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:22947200-22955000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr10:22947400-22955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:22947800-22955000	Weak transcription	Primary B cells from cord blood	blood
31	chr10:22948000-22953400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:22948000-22961400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:22948200-22951800	Weak transcription	NHLF	lung
34	chr10:22948200-22952000	Weak transcription	NHDF-Ad	bronchial
35	chr10:22948200-22953600	Weak transcription	Dnd41	blood
36	chr10:22948200-22955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:22948200-22958400	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:22948400-22952000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:22948600-22953600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:22948600-22955000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:22948800-22952400	Enhancers	Brain Cingulate Gyrus	brain
42	chr10:22949000-22951800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:22949000-22959800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:22949000-22965000	Weak transcription	Right Atrium	heart
45	chr10:22949200-22954800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:22949200-22955400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:22949200-22956800	Weak transcription	Lung	lung
48	chr10:22949200-22958200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:22949200-22969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:22949600-22955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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