Variant report

Variant	rs1171500
Chromosome Location	chr10:22948540-22948541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22947375..22950268-chr10:22969156..22971438,2	K562	blood:
2	chr10:22947010..22949481-chr10:22949817..22951993,3	K562	blood:
3	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
4	chr10:22920613..22922512-chr10:22946643..22949498,2	MCF-7	breast:
5	chr10:22936873..22939042-chr10:22947347..22949237,2	K562	blood:
6	chr10:22946500..22949135-chr10:23002832..23004603,2	K562	blood:
7	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
8	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:
9	chr10:22936873..22940866-chr10:22947347..22949426,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf115-3	chr10:22948539-22948659	NONHSAT011756

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10159847	0.81[YRI][hapmap]
rs10764341	0.88[CHB][hapmap]
rs10764342	0.88[CHB][hapmap]
rs10764343	0.88[CHB][hapmap]
rs11013095	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11013103	1.00[JPT][hapmap]
rs1171496	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs1171502	0.93[EUR][1000 genomes]
rs1171505	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1409396	0.88[CHB][hapmap]
rs1750757	0.80[EUR][1000 genomes]
rs2765997	0.85[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs2766001	0.88[EUR][1000 genomes]
rs4748818	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6482228	1.00[CHB][hapmap]
rs7087066	0.88[CHB][hapmap]
rs7895928	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
3	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:22938800-22949400	Weak transcription	HMEC	breast
7	chr10:22938800-22949600	Weak transcription	NHEK	skin
8	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
9	chr10:22941600-22949200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
11	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
12	chr10:22942600-22949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:22942600-22949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:22943400-22948600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
16	chr10:22943800-22949400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:22944200-22948600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:22944800-22948800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:22945000-22950400	Weak transcription	Liver	Liver
22	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
23	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:22945000-22956800	Weak transcription	Gastric	stomach
29	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:22945400-22951600	Weak transcription	Fetal Stomach	stomach
33	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
34	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
35	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:22945800-22950200	Enhancers	GM12878-XiMat	blood
37	chr10:22946200-22948600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:22946200-22951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
40	chr10:22946600-22948600	Enhancers	Osteobl	bone
41	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
43	chr10:22947000-22948600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:22947000-22950000	Enhancers	A549	lung
45	chr10:22947000-22951000	Weak transcription	Fetal Lung	lung
46	chr10:22947200-22949600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:22947200-22950200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr10:22947200-22954200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:22947200-22955000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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