Variant report

Variant	rs1171496
Chromosome Location	chr10:22945961-22945962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22925448..22927926-chr10:22944270..22946510,2	MCF-7	breast:
2	chr10:22944721..22947461-chr10:23031170..23034103,2	MCF-7	breast:
3	chr10:22904770..22906402-chr10:22945960..22948214,2	K562	blood:
4	chr10:22945388..22947993-chr10:22991036..22993292,2	K562	blood:
5	chr10:22932646..22934969-chr10:22944582..22946637,2	K562	blood:
6	chr10:22937993..22940131-chr10:22944693..22947159,2	K562	blood:
7	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
8	chr10:22940458..22943239-chr10:22943736..22945993,2	K562	blood:

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1062190	0.86[JPT][hapmap]
rs10764338	0.86[JPT][hapmap]
rs11013054	0.90[CHB][hapmap]
rs11013095	0.89[CEU][hapmap]
rs11013110	0.86[JPT][hapmap]
rs1171500	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs1171502	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1171505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12261508	0.86[JPT][hapmap]
rs1326341	0.86[JPT][hapmap]
rs1409397	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs16922479	0.86[JPT][hapmap]
rs1750754	0.82[CEU][hapmap]
rs1750756	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1750757	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs1750758	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs1750770	0.86[JPT][hapmap]
rs1750775	0.81[ASN][1000 genomes]
rs1778303	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs1778304	0.80[EUR][1000 genomes]
rs1778331	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1778351	0.86[JPT][hapmap]
rs1778353	0.82[CEU][hapmap]
rs1778355	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs2559524	0.86[JPT][hapmap]
rs2559526	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs2559527	0.82[CHB][hapmap]
rs2765994	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs2766001	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2913110	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs7071450	0.82[CHB][hapmap]
rs7094187	0.86[JPT][hapmap]
rs7095020	0.86[JPT][hapmap]
rs7099314	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs754822	0.84[CEU][hapmap]
rs7916957	0.86[JPT][hapmap]
rs943194	0.82[EUR][1000 genomes]
rs943195	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
4	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:22938200-22947800	Weak transcription	NH-A	brain
9	chr10:22938800-22946800	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:22938800-22949400	Weak transcription	HMEC	breast
11	chr10:22938800-22949600	Weak transcription	NHEK	skin
12	chr10:22939000-22946000	Weak transcription	Psoas Muscle	Psoas
13	chr10:22939000-22947600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
15	chr10:22941000-22947800	Weak transcription	HepG2	liver
16	chr10:22941600-22949200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr10:22942000-22946800	Enhancers	Fetal Thymus	thymus
18	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
19	chr10:22942400-22947400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:22942400-22947600	Weak transcription	Adipose Nuclei	Adipose
21	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
22	chr10:22942600-22947400	Weak transcription	Dnd41	blood
23	chr10:22942600-22947600	Weak transcription	K562	blood
24	chr10:22942600-22949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:22942600-22949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:22942800-22947800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:22943200-22948200	Enhancers	Brain Anterior Caudate	brain
28	chr10:22943400-22948600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
30	chr10:22943600-22946200	Enhancers	Fetal Muscle Leg	muscle
31	chr10:22943800-22949400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:22944000-22946200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:22944200-22948600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:22944600-22947000	Enhancers	Fetal Heart	heart
35	chr10:22944800-22946200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:22944800-22947000	Enhancers	Thymus	Thymus
37	chr10:22944800-22947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:22944800-22948800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:22945000-22946000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:22945000-22946000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:22945000-22946000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:22945000-22946200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:22945000-22946400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:22945000-22946600	Weak transcription	Osteobl	bone
47	chr10:22945000-22947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:22945000-22947600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22945000-22947600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:22945000-22947600	Weak transcription	NHDF-Ad	bronchial

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