Variant report

Variant	rs1778355
Chromosome Location	chr10:22907763-22907764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22907515..22910323-chr10:23002049..23004371,2	MCF-7	breast:
2	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
3	chr10:22907517..22909327-chr10:22970416..22973310,2	MCF-7	breast:
4	chr10:22906504..22909168-chr10:22914292..22915841,2	MCF-7	breast:
5	chr10:22898054..22899902-chr10:22906833..22909021,2	K562	blood:
6	chr10:22905924..22908510-chr10:23000876..23002578,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10764341	0.81[CEU][hapmap]
rs11013054	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1171496	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs1171505	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs1326341	0.92[YRI][hapmap]
rs1409397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409398	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750750	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750752	0.81[AFR][1000 genomes]
rs1750754	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750755	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750757	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1750758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778303	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1778304	0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1778316	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778331	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778351	0.88[JPT][hapmap];0.80[YRI][hapmap]
rs1778353	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778356	0.89[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs2256542	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2364116	0.85[ASN][1000 genomes]
rs2559522	0.89[JPT][hapmap]
rs2559523	0.89[JPT][hapmap]
rs2559524	0.88[JPT][hapmap]
rs2559526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559527	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2765994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765995	0.89[JPT][hapmap]
rs2765997	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs2765998	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798982	0.89[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs2913109	0.89[JPT][hapmap]
rs2913110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7071450	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7098460	0.89[JPT][hapmap]
rs7099314	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs754822	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912144	0.89[JPT][hapmap]
rs943194	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943195	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
2	chr10:22898200-22908000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:22899400-22909400	Enhancers	Brain Angular Gyrus	brain
4	chr10:22899800-22909600	Enhancers	Brain Hippocampus Middle	brain
5	chr10:22901400-22909400	Weak transcription	Thymus	Thymus
6	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:22901800-22908200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:22901800-22909400	Enhancers	Primary T cells from cord blood	blood
9	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:22902000-22908000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:22902000-22908000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:22902400-22907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:22902600-22908200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:22902800-22912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:22903000-22909200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:22903200-22908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:22904000-22910600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:22904600-22907800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:22904600-22907800	Enhancers	Right Atrium	heart
24	chr10:22904600-22908000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:22904600-22908400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:22904600-22909000	Enhancers	HUVEC	blood vessel
27	chr10:22904600-22909200	Enhancers	Brain Germinal Matrix	brain
28	chr10:22904800-22907800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr10:22904800-22907800	Enhancers	Psoas Muscle	Psoas
30	chr10:22905000-22908800	Weak transcription	Fetal Brain Female	brain
31	chr10:22905000-22910600	Enhancers	HSMM	muscle
32	chr10:22905000-22912400	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:22905200-22907800	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr10:22905200-22908200	Enhancers	Primary B cells from cord blood	blood
37	chr10:22905200-22908200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr10:22905200-22908400	Enhancers	Primary B cells from peripheral blood	blood
39	chr10:22905200-22909000	Weak transcription	Fetal Stomach	stomach
40	chr10:22905200-22909200	Enhancers	Hela-S3	cervix
41	chr10:22905200-22909600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:22905200-22909600	Enhancers	Brain Substantia Nigra	brain
43	chr10:22905200-22912800	Weak transcription	Colonic Mucosa	Colon
44	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
45	chr10:22905400-22907800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:22905400-22907800	Enhancers	K562	blood
47	chr10:22905400-22909200	Enhancers	Brain Cingulate Gyrus	brain
48	chr10:22905400-22909200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:22905400-22909200	Weak transcription	Pancreas	Pancrea
50	chr10:22905400-22909200	Weak transcription	Rectal Mucosa Donor 31	rectum

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