Variant report

Variant	rs2364116
Chromosome Location	chr10:22860655-22860656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22858649..22861310-chr10:23343299..23345785,2	K562	blood:
2	chr10:22857941..22860806-chr10:22861739..22864116,2	K562	blood:

rs_ID	r²[population]
rs11013054	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1409397	0.85[ASN][1000 genomes]
rs1409398	0.85[ASN][1000 genomes]
rs1750750	0.85[ASN][1000 genomes]
rs1750754	0.85[ASN][1000 genomes]
rs1750755	0.85[ASN][1000 genomes]
rs1750756	0.86[ASN][1000 genomes]
rs1750758	0.86[ASN][1000 genomes]
rs1778303	0.85[ASN][1000 genomes]
rs1778304	0.88[ASN][1000 genomes]
rs1778316	0.85[ASN][1000 genomes]
rs1778331	0.85[ASN][1000 genomes]
rs1778353	0.84[ASN][1000 genomes]
rs1778355	0.85[ASN][1000 genomes]
rs2256542	0.84[ASN][1000 genomes]
rs2559526	0.85[ASN][1000 genomes]
rs2559527	0.85[ASN][1000 genomes]
rs2559528	0.85[ASN][1000 genomes]
rs2765994	0.85[ASN][1000 genomes]
rs2765998	0.85[ASN][1000 genomes]
rs2913110	0.89[ASN][1000 genomes]
rs7071450	0.91[ASN][1000 genomes]
rs7099314	0.84[ASN][1000 genomes]
rs754822	0.85[ASN][1000 genomes]
rs943194	0.86[ASN][1000 genomes]
rs943195	0.86[ASN][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
3	chr10:22825600-22888000	Weak transcription	HMEC	breast
4	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
8	chr10:22844200-22861800	Weak transcription	HSMM	muscle
9	chr10:22844200-22862400	Weak transcription	Stomach Mucosa	stomach
10	chr10:22844200-22876200	Weak transcription	Ovary	ovary
11	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:22847400-22862400	Strong transcription	Fetal Thymus	thymus
15	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:22849600-22861000	Weak transcription	Fetal Lung	lung
17	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:22850800-22862400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:22851000-22861400	Weak transcription	Brain Germinal Matrix	brain
24	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:22853600-22861600	Weak transcription	A549	lung
26	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
27	chr10:22853800-22876200	Weak transcription	Osteobl	bone
28	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
29	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:22854200-22866400	Weak transcription	Liver	Liver
31	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
32	chr10:22854200-22887400	Weak transcription	NHEK	skin
33	chr10:22854600-22867400	Weak transcription	Fetal Brain Female	brain
34	chr10:22854800-22862800	Strong transcription	Primary B cells from cord blood	blood
35	chr10:22855200-22862400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:22855200-22862600	Strong transcription	Thymus	Thymus
37	chr10:22855200-22871000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:22855400-22862400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:22855800-22861600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:22856000-22862600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:22856000-22863200	Strong transcription	Dnd41	blood
45	chr10:22856000-22870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:22856200-22862200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:22856600-22862000	Weak transcription	HSMMtube	muscle
48	chr10:22856600-22862400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:22856600-22869800	Weak transcription	NH-A	brain
50	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links