Variant report

Variant	rs943194
Chromosome Location	chr10:22909842-22909843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22872657..22873279-chr10:22909357..22909917,2	MCF-7	breast:
2	chr10:22907515..22910323-chr10:23002049..23004371,2	MCF-7	breast:
3	chr10:22903882..22905588-chr10:22909693..22911835,2	MCF-7	breast:
4	chr10:22909318..22911709-chr10:23343539..23346250,3	K562	blood:
5	chr10:22879423..22882421-chr10:22909207..22911141,2	MCF-7	breast:
6	chr10:22909188..22910904-chr10:22920714..22923005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11013054	0.89[ASN][1000 genomes]
rs1171496	0.82[EUR][1000 genomes]
rs1171505	0.83[EUR][1000 genomes]
rs1409397	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1409398	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750750	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750754	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750755	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750756	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750757	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1750758	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778303	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778304	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1778316	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778331	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778353	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1778355	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256542	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2364116	0.86[ASN][1000 genomes]
rs2559526	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2559527	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2559528	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2765994	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765997	0.89[EUR][1000 genomes]
rs2765998	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913110	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071450	0.85[ASN][1000 genomes]
rs7099314	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs754822	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943195	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
2	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:22902800-22912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:22904000-22910600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:22905000-22910600	Enhancers	HSMM	muscle
11	chr10:22905000-22912400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:22905200-22912800	Weak transcription	Colonic Mucosa	Colon
15	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
16	chr10:22905400-22910800	Enhancers	GM12878-XiMat	blood
17	chr10:22905400-22911200	Weak transcription	Lung	lung
18	chr10:22905400-22912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:22905400-22913800	Enhancers	Brain Anterior Caudate	brain
20	chr10:22905400-22914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:22905400-22915400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:22905600-22910000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:22905800-22911000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr10:22906200-22910400	Enhancers	Fetal Lung	lung
25	chr10:22906400-22910200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:22906400-22918200	Enhancers	NHLF	lung
27	chr10:22906600-22911000	Enhancers	Fetal Muscle Leg	muscle
28	chr10:22906600-22912800	Enhancers	Placenta	Placenta
29	chr10:22906600-22913600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:22906800-22910600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:22906800-22910800	Enhancers	HMEC	breast
32	chr10:22906800-22912600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:22907000-22910600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr10:22907000-22910800	Enhancers	NH-A	brain
35	chr10:22907000-22912400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:22907400-22910200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:22907600-22913000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:22907800-22910800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:22907800-22911200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:22907800-22911800	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:22907800-22912000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:22907800-22912200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:22907800-22912600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:22907800-22912600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:22907800-22914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:22908000-22912400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:22908000-22912400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:22908000-22913200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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