Variant report

Variant	rs2765997
Chromosome Location	chr10:22896779-22896780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22878706..22881547-chr10:22895040..22897400,2	MCF-7	breast:
2	chr10:22894422..22896822-chr10:23343724..23345259,2	K562	blood:
3	chr10:22894884..22897373-chr10:22931733..22933332,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10219113	0.93[ASN][1000 genomes]
rs10741008	0.93[ASN][1000 genomes]
rs10764341	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[ASN][1000 genomes]
rs10764342	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10764343	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10828322	0.93[ASN][1000 genomes]
rs11013095	0.81[CEU][hapmap]
rs1171500	0.85[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs1171505	0.81[TSI][hapmap]
rs1409396	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1409397	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs1409398	0.95[EUR][1000 genomes]
rs1750750	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs1750754	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs1750755	0.90[EUR][1000 genomes]
rs1750756	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1750757	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs1750758	0.92[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs1778303	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1778304	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1778316	0.95[EUR][1000 genomes]
rs1778331	0.88[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs1778353	0.88[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs1778355	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs1969907	0.83[ASN][1000 genomes]
rs2256542	0.89[EUR][1000 genomes]
rs2559526	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2559527	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2765994	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2765998	0.95[EUR][1000 genomes]
rs2913110	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4748818	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6482228	0.88[CHB][hapmap]
rs7087066	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7099314	0.88[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs754822	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs7895928	0.97[ASN][1000 genomes]
rs943194	0.89[EUR][1000 genomes]
rs943195	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
9	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:22889000-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
14	chr10:22891000-22896800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:22891000-22897000	Weak transcription	Fetal Intestine Small	intestine
16	chr10:22891000-22901400	Weak transcription	Gastric	stomach
17	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
18	chr10:22891200-22904800	Weak transcription	NHLF	lung
19	chr10:22891600-22897600	Weak transcription	Left Ventricle	heart
20	chr10:22893200-22897000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:22893600-22897800	Weak transcription	Fetal Lung	lung
22	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:22894000-22897000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:22894000-22897000	Weak transcription	Lung	lung
25	chr10:22894000-22898800	Weak transcription	Spleen	Spleen
26	chr10:22894000-22902600	Weak transcription	Right Atrium	heart
27	chr10:22894000-22906600	Weak transcription	Ovary	ovary
28	chr10:22894200-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:22894200-22898400	Weak transcription	Small Intestine	intestine
30	chr10:22894200-22904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:22894600-22897600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:22894600-22899000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:22894600-22903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:22894600-22904400	Weak transcription	NHDF-Ad	bronchial
35	chr10:22894600-22904600	Weak transcription	NHEK	skin
36	chr10:22894600-22905000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:22894800-22899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:22894800-22904600	Weak transcription	Adipose Nuclei	Adipose
39	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
40	chr10:22895200-22897400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:22895200-22898400	Genic enhancers	Brain Anterior Caudate	brain
42	chr10:22895200-22899200	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr10:22895400-22897200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:22895400-22898200	Genic enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:22895400-22899400	Genic enhancers	Brain Hippocampus Middle	brain
46	chr10:22895400-22904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:22895600-22896800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:22895600-22896800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:22895600-22897000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr10:22895600-22897200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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