Variant report

Variant	rs10764341
Chromosome Location	chr10:22880313-22880314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10219113	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10741008	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764342	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764343	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828322	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1171500	0.88[CHB][hapmap]
rs12765474	0.86[AFR][1000 genomes]
rs12772257	0.91[AFR][1000 genomes]
rs1409396	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409397	0.81[CEU][hapmap]
rs1750754	0.80[CEU][hapmap]
rs1750758	0.81[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap]
rs1778331	0.88[GIH][hapmap];0.86[TSI][hapmap]
rs1778353	0.81[GIH][hapmap];0.86[TSI][hapmap]
rs1778355	0.81[CEU][hapmap]
rs1969907	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2559526	0.81[CEU][hapmap]
rs2765994	0.81[CEU][hapmap]
rs2765997	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[ASN][1000 genomes]
rs2913110	0.81[CEU][hapmap]
rs4748818	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482228	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs7071450	0.81[GIH][hapmap]
rs7087066	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895928	0.82[LWK][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7912132	0.89[YRI][hapmap]
rs7917130	0.90[AFR][1000 genomes]
rs7917460	0.83[AFR][1000 genomes]
rs7921549	0.98[LWK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
7	chr10:22854200-22887400	Weak transcription	NHEK	skin
8	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
13	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
14	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
16	chr10:22862200-22885800	Weak transcription	NHLF	lung
17	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
18	chr10:22862400-22887400	Weak transcription	A549	lung
19	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:22864000-22882400	Strong transcription	Primary T cells from cord blood	blood
22	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:22870000-22885600	Weak transcription	NH-A	brain
25	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:22870400-22895200	Weak transcription	HepG2	liver
27	chr10:22871200-22882200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:22871200-22882600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:22872000-22887600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:22872600-22881400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
32	chr10:22875400-22880600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:22875400-22882200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:22875800-22881600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:22875800-22881800	Strong transcription	Primary B cells from cord blood	blood
36	chr10:22875800-22882000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:22875800-22882000	Strong transcription	Fetal Thymus	thymus
38	chr10:22875800-22888000	Weak transcription	Stomach Mucosa	stomach
39	chr10:22876200-22880600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:22876200-22880600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:22876200-22882200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr10:22876400-22880600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:22876400-22880800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:22876400-22882200	Strong transcription	Dnd41	blood
45	chr10:22876600-22881000	Strong transcription	K562	blood
46	chr10:22876600-22881800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:22876600-22882000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:22876600-22885600	Strong transcription	GM12878-XiMat	blood
49	chr10:22876800-22880400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:22876800-22881200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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