Variant report

Variant	rs7912132
Chromosome Location	chr10:22874187-22874188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22872919..22875854-chr10:22885785..22887970,2	K562	blood:
2	chr10:22873750..22875959-chr10:23275797..23278761,2	MCF-7	breast:
3	chr10:22628968..22630659-chr10:22873828..22876622,2	K562	blood:
4	chr10:22870587..22872687-chr10:22872804..22875218,2	K562	blood:
5	chr10:22873601..22874512-chr13:52607512..52608301,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10764339	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10764341	0.89[YRI][hapmap]
rs10764344	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10828323	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10828324	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10828325	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10828328	0.82[CHB][hapmap]
rs11013052	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11013066	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11013067	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11013068	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11013077	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11013082	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11013091	0.82[CHB][hapmap]
rs1171490	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1171492	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1171497	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1171503	0.82[CHB][hapmap]
rs1171504	0.82[CHB][hapmap]
rs1171506	0.82[CHB][hapmap]
rs1171509	0.82[CHB][hapmap]
rs12246676	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12253847	0.82[CHB][hapmap]
rs12354766	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12356117	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12357289	0.82[CHB][hapmap]
rs12357384	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12357444	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12358560	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12360229	0.88[ASN][1000 genomes]
rs12360495	0.88[ASN][1000 genomes]
rs12765474	0.88[ASN][1000 genomes]
rs12770214	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12772257	0.88[ASN][1000 genomes]
rs12774725	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1326340	0.85[ASN][1000 genomes]
rs1343504	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1409393	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1409395	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1614387	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1750748	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1750777	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778334	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778335	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778338	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778339	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778340	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778345	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778346	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1778347	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2031620	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2559534	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2798981	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7071306	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7895928	0.81[CEU][hapmap]
rs7917130	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7917460	0.85[ASN][1000 genomes]
rs7921549	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs943196	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs943197	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9645524	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
4	chr10:22844200-22876200	Weak transcription	Ovary	ovary
5	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
13	chr10:22853800-22876200	Weak transcription	Osteobl	bone
14	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
16	chr10:22854200-22887400	Weak transcription	NHEK	skin
17	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
23	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
25	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:22860600-22878000	Weak transcription	Fetal Brain Male	brain
27	chr10:22862200-22876800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
29	chr10:22862200-22885800	Weak transcription	NHLF	lung
30	chr10:22862400-22879000	Weak transcription	Fetal Lung	lung
31	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
32	chr10:22862400-22887400	Weak transcription	A549	lung
33	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:22862600-22876200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:22862600-22876800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:22863200-22875000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:22863200-22876200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:22863800-22874200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:22863800-22874800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:22864000-22874200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:22864000-22874600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:22864000-22882400	Strong transcription	Primary T cells from cord blood	blood
44	chr10:22864800-22874800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:22866400-22876000	Weak transcription	Fetal Intestine Large	intestine
46	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:22866800-22876600	Weak transcription	HSMM	muscle
49	chr10:22868600-22876200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:22868800-22876600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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