Variant report

Variant	rs9645524
Chromosome Location	chr10:22876558-22876559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22628968..22630659-chr10:22873828..22876622,2	K562	blood:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10764339	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10764344	1.00[JPT][hapmap]
rs10828323	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10828324	1.00[JPT][hapmap]
rs10828325	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013052	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11013059	0.81[ASN][1000 genomes]
rs11013066	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013067	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013068	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013077	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11013082	1.00[JPT][hapmap]
rs1171490	1.00[JPT][hapmap]
rs1171492	1.00[JPT][hapmap]
rs1171497	1.00[JPT][hapmap]
rs12246676	1.00[JPT][hapmap]
rs12354766	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12356117	1.00[JPT][hapmap]
rs12357384	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12357444	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12358560	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12360229	0.96[ASN][1000 genomes]
rs12360495	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12765474	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12770214	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12772257	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774725	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1326340	0.92[ASN][1000 genomes]
rs1343504	1.00[JPT][hapmap]
rs1409393	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1409394	0.86[ASN][1000 genomes]
rs1409395	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1614387	1.00[JPT][hapmap]
rs1750748	1.00[JPT][hapmap]
rs1750777	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1778334	1.00[JPT][hapmap]
rs1778335	1.00[JPT][hapmap]
rs1778338	1.00[JPT][hapmap]
rs1778339	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1778340	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1778345	1.00[JPT][hapmap]
rs1778346	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778347	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2031620	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2559534	1.00[JPT][hapmap]
rs2798981	1.00[JPT][hapmap]
rs34786070	0.85[ASN][1000 genomes]
rs35885150	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7071306	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7912132	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7917130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917460	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7921549	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs943196	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs943197	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs943198	0.85[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
4	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
11	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
13	chr10:22854200-22887400	Weak transcription	NHEK	skin
14	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
20	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
22	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:22860600-22878000	Weak transcription	Fetal Brain Male	brain
24	chr10:22862200-22876800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
26	chr10:22862200-22885800	Weak transcription	NHLF	lung
27	chr10:22862400-22879000	Weak transcription	Fetal Lung	lung
28	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
29	chr10:22862400-22887400	Weak transcription	A549	lung
30	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:22862600-22876800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:22864000-22882400	Strong transcription	Primary T cells from cord blood	blood
34	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:22866800-22876600	Weak transcription	HSMM	muscle
37	chr10:22868800-22876600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:22870000-22880000	Weak transcription	Psoas Muscle	Psoas
39	chr10:22870000-22885600	Weak transcription	NH-A	brain
40	chr10:22870200-22876600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:22870200-22877200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:22870200-22878800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:22870200-22879800	Weak transcription	Esophagus	oesophagus
44	chr10:22870200-22879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:22870400-22878800	Weak transcription	Pancreas	Pancrea
47	chr10:22870400-22879000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:22870400-22895200	Weak transcription	HepG2	liver
49	chr10:22870800-22876600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr10:22871200-22879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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