Variant report

Variant	rs11013052
Chromosome Location	chr10:22862487-22862488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22861092..22863092-chr10:22944384..22945902,2	K562	blood:
2	chr10:22862078..22866092-chr10:23001669..23004952,3	MCF-7	breast:
3	chr10:22856169..22859441-chr10:22860666..22863498,3	K562	blood:
4	chr10:22857941..22860806-chr10:22861739..22864116,2	K562	blood:
5	chr10:22862423..22863518-chr10:23277420..23278159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10764339	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs10764344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10828324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10828325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10828328	1.00[CHB][hapmap]
rs11013053	0.81[CEU][hapmap]
rs11013059	1.00[ASN][1000 genomes]
rs11013066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013091	1.00[CHB][hapmap]
rs1171489	0.89[ASN][1000 genomes]
rs1171490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1171492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1171493	0.86[ASN][1000 genomes]
rs1171494	0.89[ASN][1000 genomes]
rs1171497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171499	0.82[ASN][1000 genomes]
rs1171503	1.00[CHB][hapmap]
rs1171504	1.00[CHB][hapmap]
rs1171506	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1171509	1.00[CHB][hapmap]
rs12246676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12253847	1.00[CHB][hapmap]
rs12354766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12356117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12357289	1.00[CHB][hapmap]
rs12357384	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12357444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12360229	0.85[ASN][1000 genomes]
rs12360495	0.85[ASN][1000 genomes]
rs12765474	0.85[ASN][1000 genomes]
rs12770214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12772257	0.85[ASN][1000 genomes]
rs12774725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1326340	0.89[ASN][1000 genomes]
rs1343504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1409394	0.89[ASN][1000 genomes]
rs1409395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1614387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1750748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1750777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750778	0.83[ASN][1000 genomes]
rs1778334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1778340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1778345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1778346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1778347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2031620	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2559534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2798981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs34208652	0.82[ASN][1000 genomes]
rs34786070	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35885150	1.00[ASN][1000 genomes]
rs7071306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7912132	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7917130	0.81[ASN][1000 genomes]
rs7917460	0.89[ASN][1000 genomes]
rs7921549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs943196	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs943197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs943198	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9645524	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
3	chr10:22825600-22888000	Weak transcription	HMEC	breast
4	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
7	chr10:22844200-22876200	Weak transcription	Ovary	ovary
8	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
19	chr10:22853800-22876200	Weak transcription	Osteobl	bone
20	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
21	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:22854200-22866400	Weak transcription	Liver	Liver
23	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
24	chr10:22854200-22887400	Weak transcription	NHEK	skin
25	chr10:22854600-22867400	Weak transcription	Fetal Brain Female	brain
26	chr10:22854800-22862800	Strong transcription	Primary B cells from cord blood	blood
27	chr10:22855200-22862600	Strong transcription	Thymus	Thymus
28	chr10:22855200-22871000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:22856000-22862600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:22856000-22863200	Strong transcription	Dnd41	blood
34	chr10:22856000-22870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:22856600-22869800	Weak transcription	NH-A	brain
36	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:22856800-22865600	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:22857000-22862600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:22857000-22862800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
42	chr10:22857200-22866200	Weak transcription	Gastric	stomach
43	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:22857400-22872200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:22857600-22865800	Weak transcription	Lung	lung
46	chr10:22857600-22866200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:22857600-22869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:22857800-22863200	Strong transcription	Primary hematopoietic stem cells	blood
49	chr10:22857800-22866000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:22858200-22866200	Weak transcription	Esophagus	oesophagus

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