Variant report

Variant	rs34208652
Chromosome Location	chr10:22948315-22948316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22947375..22950268-chr10:22969156..22971438,2	K562	blood:
2	chr10:22947010..22949481-chr10:22949817..22951993,3	K562	blood:
3	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
4	chr10:22920613..22922512-chr10:22946643..22949498,2	MCF-7	breast:
5	chr10:22936873..22939042-chr10:22947347..22949237,2	K562	blood:
6	chr10:22946500..22949135-chr10:23002832..23004603,2	K562	blood:
7	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
8	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:
9	chr10:22936873..22940866-chr10:22947347..22949426,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10828323	0.86[EUR][1000 genomes]
rs10828324	0.86[EUR][1000 genomes]
rs11013052	0.82[ASN][1000 genomes]
rs11013059	0.82[ASN][1000 genomes]
rs11013068	0.84[EUR][1000 genomes]
rs11013077	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013082	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1171489	0.80[EUR][1000 genomes]
rs1171490	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1171492	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1171493	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1171494	0.93[ASN][1000 genomes]
rs1171499	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171503	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1171504	0.82[ASN][1000 genomes]
rs1171506	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12354766	0.83[EUR][1000 genomes]
rs12357444	0.82[ASN][1000 genomes]
rs12360495	0.80[EUR][1000 genomes]
rs12770214	0.86[ASN][1000 genomes]
rs1326340	0.83[EUR][1000 genomes]
rs1409393	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409394	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409395	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1614387	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1750747	0.82[EUR][1000 genomes]
rs1750748	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1750777	0.82[EUR][1000 genomes]
rs1750778	0.87[ASN][1000 genomes]
rs1778334	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1778335	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1778338	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1778339	0.93[ASN][1000 genomes]
rs1778340	0.93[ASN][1000 genomes]
rs1778345	0.81[EUR][1000 genomes]
rs1778346	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1778347	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2154053	0.82[EUR][1000 genomes]
rs2559534	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34786070	0.86[ASN][1000 genomes]
rs35885150	0.82[ASN][1000 genomes]
rs7921549	0.83[ASN][1000 genomes]
rs943196	0.86[EUR][1000 genomes]
rs943198	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
4	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:22938800-22949400	Weak transcription	HMEC	breast
8	chr10:22938800-22949600	Weak transcription	NHEK	skin
9	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
10	chr10:22941600-22949200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
12	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
13	chr10:22942600-22949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:22942600-22949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:22943400-22948600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
17	chr10:22943800-22949400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:22944200-22948600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:22944800-22948800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:22945000-22948400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22945000-22950400	Weak transcription	Liver	Liver
24	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
25	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:22945000-22956800	Weak transcription	Gastric	stomach
31	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:22945400-22951600	Weak transcription	Fetal Stomach	stomach
35	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
36	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
37	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:22945800-22950200	Enhancers	GM12878-XiMat	blood
39	chr10:22946200-22948600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:22946200-22951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
42	chr10:22946600-22948600	Enhancers	Osteobl	bone
43	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
45	chr10:22947000-22948600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:22947000-22950000	Enhancers	A549	lung
47	chr10:22947000-22951000	Weak transcription	Fetal Lung	lung
48	chr10:22947200-22949600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:22947200-22950200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--

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