Variant report

Variant	rs7921549
Chromosome Location	chr10:22878239-22878240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22877432..22879191-chr10:22879251..22881490,2	MCF-7	breast:
2	chr10:22684019..22686176-chr10:22877333..22879550,2	K562	blood:
3	chr10:22877611..22879422-chr10:22882833..22884792,2	K562	blood:
4	chr10:22877611..22880107-chr10:22883292..22885333,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10741008	0.86[AFR][1000 genomes]
rs10764339	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10764341	0.98[LWK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs10764344	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828325	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828328	1.00[CHB][hapmap]
rs11013052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11013059	0.86[ASN][1000 genomes]
rs11013066	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11013067	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11013068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013091	1.00[CHB][hapmap]
rs1171489	0.83[ASN][1000 genomes]
rs1171490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1171492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1171493	0.80[ASN][1000 genomes]
rs1171494	0.83[ASN][1000 genomes]
rs1171497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171499	0.83[ASN][1000 genomes]
rs1171503	1.00[CHB][hapmap]
rs1171504	1.00[CHB][hapmap]
rs1171506	1.00[CHB][hapmap]
rs1171509	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs12246676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12253847	1.00[CHB][hapmap]
rs12354766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12356117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12357289	1.00[CHB][hapmap]
rs12357384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12357444	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12358560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12765474	0.85[AFR][1000 genomes]
rs12770214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12772257	0.95[AFR][1000 genomes]
rs12774725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1343504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1409394	0.90[ASN][1000 genomes]
rs1409395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1409396	0.85[LWK][hapmap];0.82[YRI][hapmap]
rs1614387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1750748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1750777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750778	0.83[ASN][1000 genomes]
rs1778334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778338	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1778340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1778345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1778346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1778347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2031620	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2559534	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2798981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs34208652	0.83[ASN][1000 genomes]
rs34786070	0.90[ASN][1000 genomes]
rs35885150	0.86[ASN][1000 genomes]
rs7071306	1.00[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs7895928	0.81[GIH][hapmap];0.80[LWK][hapmap];0.80[MEX][hapmap]
rs7912132	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7917130	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7917460	0.83[AFR][1000 genomes]
rs943196	0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs943197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs943198	0.90[ASN][1000 genomes]
rs9645524	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
9	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
11	chr10:22854200-22887400	Weak transcription	NHEK	skin
12	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
18	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
20	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
22	chr10:22862200-22885800	Weak transcription	NHLF	lung
23	chr10:22862400-22879000	Weak transcription	Fetal Lung	lung
24	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
25	chr10:22862400-22887400	Weak transcription	A549	lung
26	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:22864000-22882400	Strong transcription	Primary T cells from cord blood	blood
29	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:22870000-22880000	Weak transcription	Psoas Muscle	Psoas
32	chr10:22870000-22885600	Weak transcription	NH-A	brain
33	chr10:22870200-22878800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:22870200-22879800	Weak transcription	Esophagus	oesophagus
35	chr10:22870200-22879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:22870400-22878800	Weak transcription	Pancreas	Pancrea
38	chr10:22870400-22879000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:22870400-22895200	Weak transcription	HepG2	liver
40	chr10:22871200-22879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:22871200-22882200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:22871200-22882600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:22872000-22887600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:22872600-22879600	Weak transcription	Gastric	stomach
45	chr10:22872600-22881400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:22873800-22879000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:22874000-22878800	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
49	chr10:22875400-22880600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:22875400-22882200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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