Variant report

Variant	rs11013082
Chromosome Location	chr10:22942416-22942417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22937664..22939892-chr10:22939931..22943485,3	MCF-7	breast:
2	chr10:22940458..22943239-chr10:22943736..22945993,2	K562	blood:
3	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
4	chr10:22938179..22940547-chr10:22940973..22943233,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10764339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10764344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828323	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10828324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828325	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10828328	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11013052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013059	0.89[ASN][1000 genomes]
rs11013066	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11013067	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11013068	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11013077	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11013091	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1171489	0.86[ASN][1000 genomes]
rs1171490	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1171492	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1171493	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1171494	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171497	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171499	0.93[ASN][1000 genomes]
rs1171503	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1171504	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1171506	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1171509	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs12246676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12253847	1.00[CHB][hapmap]
rs12354766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12356117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12357289	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12357384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12357444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12358560	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12360229	0.81[ASN][1000 genomes]
rs12360495	0.81[ASN][1000 genomes]
rs12765474	0.81[ASN][1000 genomes]
rs12770214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12772257	0.81[ASN][1000 genomes]
rs12774725	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1326340	0.92[EUR][1000 genomes]
rs1343504	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409393	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409394	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409395	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1614387	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1750747	0.88[CEU][hapmap]
rs1750748	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1750775	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1750777	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778334	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1778335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1778338	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1778339	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1778340	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1778342	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1778345	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1778346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1778347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2031620	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2154053	0.88[CEU][hapmap]
rs2559534	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2798981	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34208652	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34786070	0.92[ASN][1000 genomes]
rs35885150	0.89[ASN][1000 genomes]
rs7071306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7912132	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7921549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs943196	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs943197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs943198	0.92[ASN][1000 genomes]
rs9645524	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
3	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
6	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
8	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:22936600-22943800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:22936800-22944600	Weak transcription	Gastric	stomach
11	chr10:22936800-22944800	Enhancers	Primary B cells from cord blood	blood
12	chr10:22937000-22944800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:22937400-22943200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:22937600-22944200	Weak transcription	NHLF	lung
15	chr10:22937800-22944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:22938000-22944600	Weak transcription	Fetal Heart	heart
20	chr10:22938200-22947800	Weak transcription	NH-A	brain
21	chr10:22938400-22942800	Enhancers	Spleen	Spleen
22	chr10:22938400-22943200	Weak transcription	Fetal Kidney	kidney
23	chr10:22938600-22943600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:22938600-22944200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:22938600-22944200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:22938600-22944200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:22938600-22944200	Weak transcription	Stomach Mucosa	stomach
28	chr10:22938600-22944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:22938600-22944400	Weak transcription	Osteobl	bone
30	chr10:22938800-22943400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:22938800-22943400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:22938800-22943600	Weak transcription	Fetal Lung	lung
33	chr10:22938800-22944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:22938800-22944600	Weak transcription	Colonic Mucosa	Colon
35	chr10:22938800-22946800	Enhancers	Primary hematopoietic stem cells	blood
36	chr10:22938800-22949400	Weak transcription	HMEC	breast
37	chr10:22938800-22949600	Weak transcription	NHEK	skin
38	chr10:22939000-22943400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:22939000-22944200	Weak transcription	NHDF-Ad	bronchial
40	chr10:22939000-22946000	Weak transcription	Psoas Muscle	Psoas
41	chr10:22939000-22947600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:22939200-22944000	Weak transcription	A549	lung
43	chr10:22939200-22944200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:22939400-22944400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:22939400-22945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:22939600-22943600	Weak transcription	Placenta	Placenta
47	chr10:22939800-22942600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr10:22939800-22942800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:22940000-22944200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:22940600-22942600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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