Variant report

Variant	rs1778342
Chromosome Location	chr10:22936118-22936119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22935997..22937858-chr10:22985488..22987779,2	K562	blood:
2	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:
3	chr10:22935992..22938184-chr10:22964745..22966524,2	MCF-7	breast:
4	chr10:22928174..22930597-chr10:22933685..22936850,3	K562	blood:
5	chr10:22932937..22936248-chr10:23002444..23005154,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10828323	0.92[CEU][hapmap]
rs10828324	0.92[CEU][hapmap]
rs10828325	0.88[CEU][hapmap]
rs10828328	0.88[CEU][hapmap]
rs11013066	0.88[CEU][hapmap]
rs11013067	0.88[CEU][hapmap]
rs11013068	0.88[CEU][hapmap]
rs11013077	0.91[CEU][hapmap]
rs11013082	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs11013091	0.88[CEU][hapmap]
rs1171489	0.88[EUR][1000 genomes]
rs1171490	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1171492	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1171493	0.95[EUR][1000 genomes]
rs1171494	0.92[EUR][1000 genomes]
rs1171497	1.00[CEU][hapmap]
rs1171499	0.89[EUR][1000 genomes]
rs1171502	0.84[ASN][1000 genomes]
rs1171503	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1171504	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1171505	0.81[ASN][1000 genomes]
rs1171506	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1171509	0.92[CEU][hapmap]
rs12354766	0.92[CEU][hapmap]
rs12357289	0.88[CEU][hapmap]
rs12358560	0.88[CEU][hapmap]
rs12774725	0.88[CEU][hapmap]
rs1343504	0.88[CEU][hapmap]
rs1409393	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1409394	0.96[EUR][1000 genomes]
rs1409395	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1539628	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1614387	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1750747	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1750748	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1750775	0.92[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1750777	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1750778	0.88[EUR][1000 genomes]
rs1778334	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778335	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778338	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778339	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778340	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1778345	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778346	0.96[EUR][1000 genomes]
rs1778347	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2154053	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2559534	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2766001	0.84[ASN][1000 genomes]
rs2798981	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs943196	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
3	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:22921000-22940400	Weak transcription	Ovary	ovary
5	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
7	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:22926800-22936200	Weak transcription	HSMMtube	muscle
9	chr10:22927000-22936200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:22927000-22936200	Weak transcription	Right Ventricle	heart
11	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
12	chr10:22929200-22938600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:22929800-22939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:22930400-22938600	Enhancers	Brain Hippocampus Middle	brain
16	chr10:22931200-22936200	Weak transcription	Left Ventricle	heart
17	chr10:22931200-22938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:22931200-22938400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
20	chr10:22931800-22937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:22932200-22936200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:22932200-22936400	Weak transcription	NHLF	lung
23	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus
24	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
25	chr10:22933200-22936200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:22933200-22936200	Weak transcription	Gastric	stomach
27	chr10:22933200-22936600	Weak transcription	Aorta	Aorta
28	chr10:22933200-22936800	Weak transcription	Stomach Mucosa	stomach
29	chr10:22933400-22936600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:22933400-22937400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:22933600-22936200	Weak transcription	Lung	lung
32	chr10:22933600-22936200	Weak transcription	Pancreas	Pancrea
33	chr10:22933600-22936200	Weak transcription	Right Atrium	heart
34	chr10:22933600-22936200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:22933600-22936200	Weak transcription	Spleen	Spleen
36	chr10:22933600-22936400	Enhancers	K562	blood
37	chr10:22933600-22938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
39	chr10:22934000-22936400	Weak transcription	Small Intestine	intestine
40	chr10:22934600-22936800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:22934800-22936400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr10:22934800-22937800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:22934800-22939400	Enhancers	Dnd41	blood
44	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:22935000-22936200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr10:22935000-22936200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr10:22935000-22936400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:22935000-22936400	Flanking Active TSS	GM12878-XiMat	blood
49	chr10:22935000-22936800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:22935000-22937000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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