Variant report

Variant	rs1171489
Chromosome Location	chr10:22939861-22939862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22938780..22940406-chr10:22964065..22965639,2	K562	blood:
2	chr10:22937993..22940131-chr10:22944693..22947159,2	K562	blood:
3	chr10:22938179..22940547-chr10:22940973..22943233,2	K562	blood:
4	chr10:22937664..22939892-chr10:22939931..22943485,3	MCF-7	breast:
5	chr10:22936873..22940866-chr10:22947347..22949426,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10764339	0.82[ASN][1000 genomes]
rs10764344	0.86[ASN][1000 genomes]
rs10828324	0.93[ASN][1000 genomes]
rs11013052	0.89[ASN][1000 genomes]
rs11013059	0.89[ASN][1000 genomes]
rs11013077	0.83[EUR][1000 genomes]
rs11013082	0.86[ASN][1000 genomes]
rs1171490	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171492	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171493	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171494	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1171499	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171503	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1171504	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1171506	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1171509	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12356117	0.86[ASN][1000 genomes]
rs12357384	0.82[ASN][1000 genomes]
rs12357444	0.89[ASN][1000 genomes]
rs12360229	0.82[ASN][1000 genomes]
rs12360495	0.82[ASN][1000 genomes]
rs12765474	0.82[ASN][1000 genomes]
rs12770214	0.93[ASN][1000 genomes]
rs12772257	0.82[ASN][1000 genomes]
rs1409393	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409394	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409395	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1614387	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1750747	0.92[EUR][1000 genomes]
rs1750748	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1750775	0.89[EUR][1000 genomes]
rs1750777	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1750778	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778334	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778335	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778338	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778339	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1778340	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1778342	0.88[EUR][1000 genomes]
rs1778345	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778346	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1778347	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2154053	0.92[EUR][1000 genomes]
rs2559534	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2798981	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34208652	0.80[EUR][1000 genomes]
rs34786070	0.93[ASN][1000 genomes]
rs35885150	0.89[ASN][1000 genomes]
rs7071306	0.82[ASN][1000 genomes]
rs7921549	0.83[ASN][1000 genomes]
rs943196	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs943197	0.82[ASN][1000 genomes]
rs943198	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22921000-22940400	Weak transcription	Ovary	ovary
3	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
4	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
6	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus
7	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
8	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
9	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
12	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:22936600-22942000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:22936600-22943800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:22936800-22940200	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:22936800-22941800	Weak transcription	Esophagus	oesophagus
17	chr10:22936800-22944600	Weak transcription	Gastric	stomach
18	chr10:22936800-22944800	Enhancers	Primary B cells from cord blood	blood
19	chr10:22937000-22941800	Weak transcription	Aorta	Aorta
20	chr10:22937000-22944800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:22937400-22943200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:22937600-22944200	Weak transcription	NHLF	lung
23	chr10:22937800-22940400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22937800-22940600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:22937800-22944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:22938000-22940200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:22938000-22940400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:22938000-22944600	Weak transcription	Fetal Heart	heart
32	chr10:22938200-22947800	Weak transcription	NH-A	brain
33	chr10:22938400-22940000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:22938400-22942000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:22938400-22942800	Enhancers	Spleen	Spleen
36	chr10:22938400-22943200	Weak transcription	Fetal Kidney	kidney
37	chr10:22938600-22940400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:22938600-22940400	Weak transcription	HSMMtube	muscle
39	chr10:22938600-22941800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:22938600-22943600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:22938600-22944200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:22938600-22944200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:22938600-22944200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:22938600-22944200	Weak transcription	Stomach Mucosa	stomach
45	chr10:22938600-22944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:22938600-22944400	Weak transcription	Osteobl	bone
47	chr10:22938800-22940000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:22938800-22940200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22938800-22940200	Weak transcription	HSMM	muscle
50	chr10:22938800-22940400	Weak transcription	Adipose Nuclei	Adipose

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