Variant report

Variant	rs12360495
Chromosome Location	chr10:22887162-22887163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22881423..22883743-chr10:22885437..22887550,3	MCF-7	breast:
2	chr10:22885033..22888742-chr10:22902706..22906221,3	K562	blood:
3	chr10:22887097..22891017-chr10:22894744..22899143,5	K562	blood:
4	chr10:22872919..22875854-chr10:22885785..22887970,2	K562	blood:
5	chr10:22882918..22885289-chr10:22885460..22887558,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10764339	1.00[ASN][1000 genomes]
rs10764344	0.82[ASN][1000 genomes]
rs10828323	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828324	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10828325	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013052	0.85[ASN][1000 genomes]
rs11013059	0.85[ASN][1000 genomes]
rs11013066	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013067	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013068	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013077	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013082	0.81[ASN][1000 genomes]
rs1171489	0.82[ASN][1000 genomes]
rs1171494	0.81[ASN][1000 genomes]
rs12354766	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12356117	0.82[ASN][1000 genomes]
rs12357384	1.00[ASN][1000 genomes]
rs12357444	0.85[ASN][1000 genomes]
rs12358560	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12360229	1.00[ASN][1000 genomes]
rs12765474	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770214	0.88[ASN][1000 genomes]
rs12772257	1.00[ASN][1000 genomes]
rs12774725	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326340	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1409393	0.82[ASN][1000 genomes]
rs1409394	0.82[ASN][1000 genomes]
rs1409395	0.82[ASN][1000 genomes]
rs1750748	0.81[ASN][1000 genomes]
rs1750777	0.82[ASN][1000 genomes]
rs1778339	0.82[ASN][1000 genomes]
rs1778340	0.82[ASN][1000 genomes]
rs1778345	0.82[ASN][1000 genomes]
rs1778347	0.88[ASN][1000 genomes]
rs2031620	0.96[ASN][1000 genomes]
rs2559534	0.81[ASN][1000 genomes]
rs2798981	0.82[ASN][1000 genomes]
rs34208652	0.80[EUR][1000 genomes]
rs34786070	0.88[ASN][1000 genomes]
rs35885150	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7071306	1.00[ASN][1000 genomes]
rs7912132	0.88[ASN][1000 genomes]
rs7917130	0.96[ASN][1000 genomes]
rs7917460	0.96[ASN][1000 genomes]
rs943196	0.91[ASN][1000 genomes]
rs943197	1.00[ASN][1000 genomes]
rs943198	0.88[ASN][1000 genomes]
rs9645524	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
5	chr10:22854200-22887400	Weak transcription	NHEK	skin
6	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
9	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
10	chr10:22862400-22887400	Weak transcription	A549	lung
11	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:22870400-22895200	Weak transcription	HepG2	liver
16	chr10:22872000-22887600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
18	chr10:22875800-22888000	Weak transcription	Stomach Mucosa	stomach
19	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
20	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
21	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
23	chr10:22879400-22888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22879600-22887400	Weak transcription	HUVEC	blood vessel
25	chr10:22880000-22887400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:22880200-22887400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:22880200-22889400	Weak transcription	Aorta	Aorta
30	chr10:22880200-22890000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:22880200-22893400	Weak transcription	Ovary	ovary
33	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:22880400-22887400	Weak transcription	HSMM	muscle
38	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
39	chr10:22880400-22896600	Weak transcription	Liver	Liver
40	chr10:22880600-22887400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:22880600-22887400	Weak transcription	Osteobl	bone
42	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:22880800-22889400	Weak transcription	Esophagus	oesophagus
44	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose
45	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
46	chr10:22881600-22890200	Weak transcription	Right Atrium	heart
47	chr10:22881800-22889200	Weak transcription	Thymus	Thymus
48	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:22882200-22889200	Weak transcription	Lung	lung
50	chr10:22882200-22889200	Weak transcription	Dnd41	blood

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