Variant report

Variant	rs6482228
Chromosome Location	chr10:22974261-22974262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22973856..22976204-chr10:22979187..22981448,2	MCF-7	breast:
2	chr10:22972317..22974563-chr10:23000781..23004617,5	K562	blood:
3	chr10:22970833..22976396-chr10:22998694..23005048,8	K562	blood:
4	chr10:22918230..22923281-chr10:22970702..22974726,7	K562	blood:
5	chr10:22973997..22977773-chr10:23342943..23345653,3	K562	blood:
6	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
7	chr10:21814525..21816232-chr10:22972683..22974266,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10159697	1.00[JPT][hapmap]
rs10159847	1.00[JPT][hapmap]
rs10218845	1.00[JPT][hapmap]
rs10508650	1.00[JPT][hapmap]
rs10508651	1.00[JPT][hapmap]
rs10764341	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs10764342	0.88[CHB][hapmap]
rs10764343	0.88[CHB][hapmap]
rs10828320	1.00[JPT][hapmap]
rs11013095	0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[MEX][hapmap];0.92[ASN][1000 genomes]
rs11013098	0.85[EUR][1000 genomes]
rs11013103	1.00[JPT][hapmap]
rs11013105	1.00[JPT][hapmap]
rs11013106	1.00[JPT][hapmap]
rs11592199	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs11597784	0.84[EUR][1000 genomes]
rs1171500	1.00[CHB][hapmap]
rs12098721	1.00[JPT][hapmap]
rs12249907	0.82[EUR][1000 genomes]
rs12255136	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12257665	0.81[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs12266181	0.89[EUR][1000 genomes]
rs1409396	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs1624192	1.00[JPT][hapmap]
rs1631873	1.00[JPT][hapmap]
rs16922530	1.00[JPT][hapmap]
rs16922539	1.00[JPT][hapmap]
rs16922560	1.00[JPT][hapmap]
rs16922564	1.00[JPT][hapmap]
rs16922578	1.00[JPT][hapmap]
rs16922580	1.00[JPT][hapmap]
rs16922586	1.00[JPT][hapmap]
rs17525760	1.00[JPT][hapmap]
rs17526135	1.00[JPT][hapmap]
rs1778302	1.00[JPT][hapmap]
rs1778317	1.00[JPT][hapmap]
rs1778327	1.00[JPT][hapmap]
rs2765997	0.88[CHB][hapmap]
rs34729599	0.91[EUR][1000 genomes]
rs35360085	0.88[EUR][1000 genomes]
rs4748818	0.88[CHB][hapmap]
rs58647212	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482227	1.00[JPT][hapmap]
rs7071198	1.00[JPT][hapmap]
rs7075433	1.00[JPT][hapmap]
rs7075499	1.00[JPT][hapmap]
rs7079078	0.82[EUR][1000 genomes]
rs7087066	0.88[CHB][hapmap]
rs7090286	1.00[JPT][hapmap]
rs7100360	0.83[EUR][1000 genomes]
rs7100490	1.00[JPT][hapmap]
rs7895928	0.83[CHD][hapmap]
rs7900517	1.00[JPT][hapmap]
rs7902016	1.00[JPT][hapmap]
rs7919243	1.00[JPT][hapmap]
rs7924019	1.00[JPT][hapmap]
rs997650	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:22962600-22974600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:22968400-22976000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:22969400-22976600	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:22969800-22975200	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:22969800-22975200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:22969800-22975600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:22969800-22976000	Enhancers	Brain Anterior Caudate	brain
11	chr10:22970000-22974600	Enhancers	Stomach Mucosa	stomach
12	chr10:22970000-22975200	Enhancers	HSMM	muscle
13	chr10:22970200-22974800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:22970200-22975000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:22970400-22977800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
17	chr10:22971000-22974400	Enhancers	HSMMtube	muscle
18	chr10:22971000-22974600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:22971200-22975800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:22971400-22976000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:22972000-22977200	Enhancers	Brain Hippocampus Middle	brain
22	chr10:22972200-22974800	Enhancers	Small Intestine	intestine
23	chr10:22972400-22974400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:22972400-22975600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:22972400-22977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:22972600-22974600	Enhancers	Primary B cells from peripheral blood	blood
27	chr10:22972600-22974800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:22972600-22974800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:22972600-22975800	Enhancers	Fetal Thymus	thymus
30	chr10:22972600-22978400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:22972600-22978400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:22972600-22979000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr10:22972600-22983600	Enhancers	Brain Substantia Nigra	brain
34	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:22972800-22974400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:22972800-22974600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:22972800-22977800	Enhancers	Primary T cells from cord blood	blood
38	chr10:22972800-22978200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:22973000-22974400	Weak transcription	Left Ventricle	heart
42	chr10:22973000-22974800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:22973000-22975000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:22973000-22976200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:22973000-22976400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:22973000-22978200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr10:22973000-22978400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
49	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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