Variant report

Variant	rs11013106
Chromosome Location	chr10:22985204-22985205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:22985025-22985234	A549	lung:	n/a	chr10:22985112-22985123 chr10:22985112-22985125
2	POLR2A	chr10:22985180-22985287	K562	blood:	n/a	n/a
3	CEBPB	chr10:22984942-22985228	HepG2	liver:	n/a	chr10:22985112-22985123 chr10:22985112-22985125

Variant related genes	Relation type
PIP4K2A	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10159697	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10159847	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	1.00[JPT][hapmap]
rs10508651	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11013104	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs11013105	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs12260163	0.84[ASN][1000 genomes]
rs1624192	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626919	0.84[CEU][hapmap]
rs1631873	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922578	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16922580	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16922586	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17525760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17526135	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778327	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35355312	0.84[ASN][1000 genomes]
rs45484796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45496900	1.00[ASN][1000 genomes]
rs45520040	0.84[ASN][1000 genomes]
rs45620939	1.00[ASN][1000 genomes]
rs58727843	0.81[EUR][1000 genomes]
rs61228116	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482227	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482228	1.00[JPT][hapmap]
rs7071198	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7090286	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7100490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900517	1.00[JPT][hapmap]
rs7902016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7915780	0.84[ASN][1000 genomes]
rs7919243	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7924019	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
2	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
6	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:22973200-22987400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:22973800-22985800	Weak transcription	Fetal Heart	heart
12	chr10:22974000-22985400	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:22974800-22988200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:22974800-22988400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
16	chr10:22976000-22989000	Weak transcription	Thymus	Thymus
17	chr10:22977200-22998400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:22977600-22999200	Weak transcription	Dnd41	blood
19	chr10:22978200-22988200	Weak transcription	Left Ventricle	heart
20	chr10:22980200-22986800	Weak transcription	Adipose Nuclei	Adipose
21	chr10:22980200-22987800	Weak transcription	Fetal Lung	lung
22	chr10:22980200-22988200	Weak transcription	Pancreas	Pancrea
23	chr10:22980200-22988200	Weak transcription	Spleen	Spleen
24	chr10:22980200-22993600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:22980400-22999000	Weak transcription	Lung	lung
26	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:22980600-22989000	Weak transcription	A549	lung
28	chr10:22980800-22988000	Weak transcription	Small Intestine	intestine
29	chr10:22980800-22989000	Weak transcription	HepG2	liver
30	chr10:22982200-22989000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:22983000-22986200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:22983000-22987000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:22983000-22989000	Weak transcription	Stomach Mucosa	stomach
34	chr10:22983000-22999000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:22983000-22999200	Weak transcription	HSMM	muscle
36	chr10:22983200-22985800	Weak transcription	Brain Anterior Caudate	brain
37	chr10:22983200-22986000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:22983200-22986000	Enhancers	K562	blood
39	chr10:22983200-22986200	Weak transcription	Right Atrium	heart
40	chr10:22983200-22988000	Weak transcription	NHDF-Ad	bronchial
41	chr10:22983200-22988200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr10:22983200-22988200	Weak transcription	Gastric	stomach
43	chr10:22983200-22989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:22983200-22989600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:22983200-22989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:22983200-22990400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:22983200-22992400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:22983200-22999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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