Variant report

Variant	rs7924019
Chromosome Location	chr10:22949470-22949471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22947375..22950268-chr10:22969156..22971438,2	K562	blood:
2	chr10:22947010..22949481-chr10:22949817..22951993,3	K562	blood:
3	chr10:22948750..22951545-chr10:22955363..22957165,2	MCF-7	breast:
4	chr10:22949069..22952747-chr10:22952895..22957056,4	K562	blood:
5	chr10:22920613..22922512-chr10:22946643..22949498,2	MCF-7	breast:
6	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
7	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10159697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10159847	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10508651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013106	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs12260163	0.85[ASN][1000 genomes]
rs1624192	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626919	0.82[CEU][hapmap]
rs1631873	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922529	0.82[EUR][1000 genomes]
rs16922530	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16922539	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs16922560	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16922564	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922566	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16922580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs16922586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17525760	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17526135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778327	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35355312	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs45520040	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs45620939	0.81[AMR][1000 genomes]
rs59403140	0.82[EUR][1000 genomes]
rs61531925	0.80[EUR][1000 genomes]
rs6482227	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6482228	1.00[JPT][hapmap]
rs7071198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7100490	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7909660	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915780	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7919243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs997650	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
3	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:22938800-22949600	Weak transcription	NHEK	skin
7	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
8	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
9	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
10	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
11	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:22945000-22950400	Weak transcription	Liver	Liver
14	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
15	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:22945000-22956800	Weak transcription	Gastric	stomach
21	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:22945400-22951600	Weak transcription	Fetal Stomach	stomach
25	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
26	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
27	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:22945800-22950200	Enhancers	GM12878-XiMat	blood
29	chr10:22946200-22951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
31	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
33	chr10:22947000-22950000	Enhancers	A549	lung
34	chr10:22947000-22951000	Weak transcription	Fetal Lung	lung
35	chr10:22947200-22949600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:22947200-22950200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:22947200-22954200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:22947200-22955000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr10:22947400-22950000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:22947400-22951000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr10:22947400-22951600	Enhancers	Primary T cells from cord blood	blood
43	chr10:22947400-22955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:22947600-22949800	Enhancers	Primary B cells from peripheral blood	blood
45	chr10:22947600-22950000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:22947600-22950200	Enhancers	K562	blood
47	chr10:22947800-22949800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:22947800-22950600	Enhancers	Fetal Thymus	thymus
49	chr10:22947800-22950800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:22947800-22955000	Weak transcription	Primary B cells from cord blood	blood

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